Clone FMO04408 Report

Search the DGRC for FMO04408

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12347-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04408.5prime Sequence

365 bp (365 high quality bases) assembled on 2008-07-30

> FMO04408.5prime
ATACGAAGTTATCAGTCGACATGGACGAGTTACTAAATCTGGGTCTCAAC
GGCATACAGTTTGAACTGGAGGAATCTGCGGCGGATAGCGACGAGGACAG
TGAAGGAGGAGGAGCACTGGGCGGTTCTGATACCACATTGCTGTACTATT
TTAGAAGATTGTACCATGTTCTCAGTGGGAATATCTTCATGACCACCTAC
GTGGAGCGCGGGCAGAGAGAATACTTTGCAGGATTCAGCAACGTGGAATT
GGTGGCTCCGTTCCAGGGTGAACGACAGAGCCAGCGGTACCGCTGGATCC
ACCTGTCGCTCATCTTCCGCGCCTTCAGATCCAAGACAGAGTCCTGGGCA
AGCTTTCTAGACCAT

FMO04408.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-RB 988 CG12347-RB 65..392 20..347 1640 100 Plus
CG12347-RA 714 CG12347-RA 84..411 20..347 1640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17906528..17906855 20..347 1640 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:06:53 has no hits.

FMO04408.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:36 Download gff for FMO04408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 20..352 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:36 Download gff for FMO04408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 20..352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:05 Download gff for FMO04408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 20..352 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:05 Download gff for FMO04408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17906528..17906860 20..352 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:36 Download gff for FMO04408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13732250..13732582 20..352 99   Plus