Clone FMO04411 Report

Search the DGRC for FMO04411

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:11
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04411.5prime Sequence

520 bp (520 high quality bases) assembled on 2008-07-30

> FMO04411.5prime
AAGGAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTAT
CTACAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGT
GTTTACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCAC
AAATTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCA
CAACAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTAC
AACCATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTC
GATCCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCA
CATATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTC
ATATTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTA
CGAGATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATT
ACGCAAGCTTTCTAGACCAT

FMO04411.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-RB 717 CG1545-RB 98..582 18..502 2425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11059279..11059522 261..18 1220 100 Minus
X 23542271 X 11057680..11057800 502..382 605 100 Minus
X 23542271 X 11058365..11058485 381..261 605 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:43:17 has no hits.

FMO04411.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:55 Download gff for FMO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 18..509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:34 Download gff for FMO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 18..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:57 Download gff for FMO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 18..509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:57 Download gff for FMO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11059280..11059522 18..260 100   Minus
X 11057674..11057800 382..509 96 <- Minus
X 11058365..11058485 261..381 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:55 Download gff for FMO04411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10951707..10951833 382..509 96 <- Minus
arm_X 10952398..10952518 261..381 100 <- Minus
arm_X 10953313..10953555 18..260 100   Minus