FMO04412.5prime Sequence
1249 bp (986 high quality bases) assembled on 2008-07-30
> FMO04412.5prime
TTATCAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAATGCGG
TAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGCTCCGCACTGTA
TAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGAGCGC
ATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCACGCGC
AATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCTGGCG
CCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATCGGGA
GCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAACTGGT
GGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGATTGCC
TTCAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTCCGGC
ATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACCGCAT
CATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACGGTGG
TGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAACACC
GATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCTTCCG
CACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTGGTTT
CGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCAGCTG
AACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTTCCCCCGGC
TGCACTTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCGCAA
CAATACCGGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATGTTCGATG
CCAAGAACATGAATGGCTGCGTGCGATCCGCGACAATGGTCGCTTATCTG
ACCGTCGCCGCATCTTCCGTGCCGCATGTCCATGAAGGAGGTGGACGAAG
CAAATGCTCAACATTCAAAACAAGAAACAGCAGCTTCTTCTTGAAATGGA
TTCCGAATAACTGCAAGAAAGGCGGGTTGCAATATTCCGCCCAAGAGCTC
TCCAAAAGTGGCAACTCCATGGCAACTCTCACCGCCATTTCAGGACCTAT
TCAACGGATCTGGGAACATACGCCAGTTCCGAAGGAAGGCCTTCTTGCCA
TTGATACCGGCCAAGGAACTGCGTGGAACACAGAAAACAAGTGGTAGAT
FMO04412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1424 | 13..1207 | 5105 | 96.1 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..1155 | 19..1061 | 2390 | 82.6 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1260 | 70..1061 | 2315 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408919..9409603 | 1093..403 | 2830 | 97.3 | Minus |
| 2R | 25286936 | 2R | 19447794..19448746 | 1026..70 | 2100 | 83.2 | Minus |
| 3R | 32079331 | 3R | 9409659..9410052 | 406..13 | 1925 | 99.2 | Minus |
| 2R | 25286936 | 2R | 24311188..24311783 | 400..998 | 1530 | 86.4 | Plus |
| 3R | 32079331 | 3R | 27972919..27973153 | 536..302 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27968984..27969189 | 912..705 | 550 | 86.5 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 178..406 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 695..533 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 646..532 | 260 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:28 has no hits.
FMO04412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:42 Download gff for
FMO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1305 | 1..1093 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:31 Download gff for
FMO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1305 | 1..1093 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:51 Download gff for
FMO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1305 | 1..1093 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:51 Download gff for
FMO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408919..9409600 | 406..1093 | 97 | <- | Minus |
| 3R | 9409660..9410063 | 1..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:42 Download gff for
FMO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234641..5235322 | 406..1093 | 97 | <- | Minus |
| arm_3R | 5235382..5235785 | 1..405 | 98 | | Minus |
