FMO04416.5prime Sequence
1130 bp (1052 high quality bases) assembled on 2008-07-30
> FMO04416.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCATGCGATTCAA
GTGCCCGCCGGTGGTTCGTCGCCTGGTGCTGCCTCCTACATTCCCTGCGT
GACCTTTGCCCCCGATCAAAATGAATCCGTAGTGACGAAGCAGCGGATAG
GAACGCTCGTGGCGGAGCGAACAGCCCAACATCGCCTCTTCTACGGCATC
GAGGTGATGGCCAGCGATCCGAGTGGCCGGCCAACCTGCCTGGACTTTAA
TCACTTCCTGCCGCTCCTGCCCACCTTCGTGAGCTTCGTTTGGCTGAGTC
AGCGGTACTGGGACGTGGAGCCAGTGGGTCAGGTGGAGAGCCTTCAGATG
GCCCAACACCTGGCCACACGCATTCCCGTGCTGCCCCATGTGTCCGCCTA
TCGAATGAGTAGGCAGCGACTGGATCAGTTTTTGGCCCTCAACTTTAGCA
GTCTTTTGGCCGTTCGAGGGGATCGAGTTCACGAGGATCAGGATTTCTCG
ATTAGCTACCCCATGGTGGAGCAATCGATACGGCAGAGGGGTGAAACAAT
ATCAGTCTGTGTGGGTGGATATCCAGAGGGATACACTAGTTTAGGCGACA
TACCACAAAATTCAGCTAAGAACATGGAGTTTCTAAAGGCAAAGATTGAT
GCTGGAGCAGATTGCATTATCACACAGTTATGCTACCGTCCCGAGGTCAT
AGTGCAATTTGTGAAGGACTGTCGAGCAGCTGGAATCTCGGTACCCATTG
TTGTGGGACTGATGTCGCATGAATCCTTTCGCTCCTACTCAATGATCGAG
CAAATAACCGGCGTCCATCTGCCAGATGATTTGCGAGAGCAACTCGATCA
GCTGCATAGTGCCCATATGAAGGATATGAAGTCTGACCAAGATCTGATAA
GAAGGTTCTTTGTTAGCCTCACCGTCCGAACGATTCGTAATGTTTGGATG
CCGATGTGGGGTTTGGGGCTTCCACTTCTTCACACTCAGCCGCTTTAAGT
CCGTCCAGGCTGTGCTGCAGACTTCGAGATCTGGATCTGTTAAAGATTCT
GAAAGATAGAAAGGCTACGAAGGCCAGCTTCTAGAACCATCGTTTGGCCG
CGCGGCCAGTAGTGGTCTAATCTATCTATC
FMO04416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7560-RA | 1107 | CG7560-RA | 25..1068 | 36..1071 | 5015 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11425182..11425689 | 36..543 | 2540 | 100 | Plus |
| 3L | 28110227 | 3L | 11425920..11426326 | 643..1045 | 1840 | 98.5 | Plus |
| 3L | 28110227 | 3L | 11425753..11425854 | 543..644 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:16:21 has no hits.
FMO04416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:55 Download gff for
FMO04416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7560-RA | 22..1071 | 31..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:49 Download gff for
FMO04416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7560-RA | 30..1079 | 31..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:26 Download gff for
FMO04416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7560-RA | 22..1071 | 31..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:26 Download gff for
FMO04416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11425179..11425689 | 31..543 | 99 | -> | Plus |
| 3L | 11425754..11425854 | 544..644 | 100 | -> | Plus |
| 3L | 11425922..11426359 | 645..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:55 Download gff for
FMO04416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11418279..11418789 | 31..543 | 99 | -> | Plus |
| arm_3L | 11418854..11418954 | 544..644 | 100 | -> | Plus |
| arm_3L | 11419022..11419459 | 645..1077 | 97 | | Plus |
