FMO04417.5prime Sequence
719 bp (719 high quality bases) assembled on 2008-07-30
> FMO04417.5prime
GCATACATTAAACGAAGTTATCAGTCGACATGGATTCCAAACTAGATATG
TTCGAGGACGTGAACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCC
GGGCAAAAGAACCACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACA
ATACTCTGGATGAGCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCC
GTAGGCATTAAGTTCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCT
GCTACGAGATTGGGACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGG
CCACCATACTACAAGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGA
CCCGAGTTCGCCCAGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGT
CACACTCAACTCCAAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCG
TCTGCGTGCTGGGCTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTG
TGCCGGGTAATCCTGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCG
TTTTGTGACCACCACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTG
TTTTCCTGGGTCAGAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTAC
CCCATCTTTCTGTTCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAA
TGCAAGCTTTCTAGACCAT
FMO04417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3652-RA | 867 | CG3652-RA | 87..758 | 30..701 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4393501..4393715 | 262..48 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 4393262..4393433 | 433..262 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 4393042..4393199 | 591..434 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 4392879..4392989 | 701..591 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:31 has no hits.
FMO04417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:01 Download gff for
FMO04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 85..758 | 26..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:37 Download gff for
FMO04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 23..696 | 26..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:03 Download gff for
FMO04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3652-RA | 85..758 | 26..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:03 Download gff for
FMO04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4392879..4392988 | 592..701 | 100 | <- | Minus |
| 2L | 4393042..4393199 | 434..591 | 100 | <- | Minus |
| 2L | 4393262..4393433 | 262..433 | 100 | <- | Minus |
| 2L | 4393502..4393715 | 48..261 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:01 Download gff for
FMO04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4393502..4393715 | 48..261 | 100 | <- | Minus |
| arm_2L | 4392879..4392988 | 592..701 | 100 | <- | Minus |
| arm_2L | 4393042..4393199 | 434..591 | 100 | <- | Minus |
| arm_2L | 4393262..4393433 | 262..433 | 100 | <- | Minus |
