FMO04419.5prime Sequence
1295 bp (917 high quality bases) assembled on 2008-07-30
> FMO04419.5prime
AGTTATCAGTCGACATGGACGTGTCCCTCACTGAGCCGGAGACGCGCTTC
TACAGTGAGTTGTTCCAATGCTGCGACGTGGAGAAGACAGGCAAGGTGCC
CATGCTTAAGGCCACCGAGCTCTTTCGCTCGGCGGACATCGCCAATGAGA
CCGTGATTGAGATCACCGGTCTGGCGGGGATACCCTCCACGGCGCTACAC
ATCTCGCGGACACAGTTCTACTCATGCCTGAAGCTAATCGCTGCTCATCA
GGCGGCCATGCCCCTGCGCCAGGAGCTGATCTTGGCCACGTTTCCGCTTC
CATTACCGCACTTTAGCTGGAAGGAGGCGGTTACAGCTCCGGTGGCTGTC
GAAAATGGATTGACTGCCTTGCCACCGCCACCACCCACAGATCGCAGAAA
TTCACTGCGTCGTAACTCGCAGCAAGAGCAGCTGCAAGACACCTCTGATG
TGCCCAGCACCGACTCCGAGGTTGAGCAAAACGAATCAGTGGACGATGCG
ACAGGCCATGGACGAGGTACGGATGGCTGTGGGGTCGTCAGCAGCAGCAG
CCGCGAAAATGTCGGGCGACGACGAGGAGGCGGTACTGGTGGTGGATCGC
CAGAAGCCTGGAGCACTAACAGTGACAGCCCCACGCCCACCAACAGCGTG
GCTGAGCGGCCTTGGGCGCAGGACACCCTCTGGCAGGGTTTGCTGGGCGA
CGAGCATCGCCAGCTGCTAGGCACGGAGGAAGAGTCTTCCGATCGCCACA
ACAGCGACGACGATGACAACGAGAGCGAATTGGTGACCATTTTACCAGAT
AACCCCGGAAACATCGCGAGTAACTATAATAAGCAGTTCAGGACGGTGCA
AAAGGATCCGCATGGGTCTGCTTTCGGGCCAAGCAGCAAAGAAATTTTTT
TGAAAAGAGCCGCATTCCCTGTGGAAGGAGCTACGTCCCATTTGGGCAGT
TGTTGTGACGTTACCGGCGAATGGGAGCGCTTAGTCTGGTCTGAATTTTC
CGGCCGCCCAGTGCATTTGGTGGGGTCTCAAGGGCGCAACAACTTTCCTT
TTGCCCACAGTCTGGCCCCCCTGTTTTGCTATCCCACGGGTGCTATAAGA
CACTTGGCGTTCCGGGGAATGGAAAAGGGGGGGTGAACACTTCCCTCGGT
CAACTCGGGCCGGCGCCTGGCCTCTCAGGGAGCCACCCCTGGAGGGCTTG
TACTCCTCGTGCCCCTAAAGTAGATGACATATGGAGGAACAACACATTTC
GAACATATAACTACTACGTATGTACAGAGCGGGCGTATCTCTCAC
FMO04419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reps-RB | 4733 | CG6192-RB | 432..1475 | 14..1076 | 4595 | 96.7 | Plus |
| Reps-RA | 4820 | CG6192-RA | 432..1475 | 14..1076 | 4595 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11105607..11106013 | 566..160 | 2035 | 100 | Minus |
| 2L | 23513712 | 2L | 11105206..11105525 | 889..566 | 1375 | 97.8 | Minus |
| 2L | 23513712 | 2L | 11106067..11106214 | 161..14 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:41 has no hits.
FMO04419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:30 Download gff for
FMO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reps-RA | 428..1434 | 7..1033 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:38 Download gff for
FMO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6192-RA | 421..1427 | 7..1033 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:52 Download gff for
FMO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reps-RA | 428..1434 | 7..1033 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:52 Download gff for
FMO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11106067..11106218 | 7..161 | 98 | | Minus |
| 2L | 11105205..11105524 | 567..891 | 97 | <- | Minus |
| 2L | 11105607..11106011 | 162..566 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:30 Download gff for
FMO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11105205..11105524 | 567..891 | 97 | <- | Minus |
| arm_2L | 11105607..11106011 | 162..566 | 100 | <- | Minus |
| arm_2L | 11106067..11106218 | 7..161 | 98 | | Minus |
