FMO04420.5prime Sequence
616 bp (543 high quality bases) assembled on 2008-07-30
> FMO04420.5prime
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAACAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
CCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCTAGCTTTCGCACACTCTGAAGGACTTCAAGGGCGCCTGCAAAGGA
ATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCACCA
TCTTCTAGGGCGCTGC
FMO04420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5554-RA | 1565 | CG5554-RA | 157..760 | 15..616 | 2880 | 98.7 | Plus |
| CG5554-RB | 1586 | CG5554-RB | 157..781 | 15..616 | 2660 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23845766..23845941 | 352..527 | 865 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23845157..23845331 | 15..189 | 860 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23845535..23845696 | 190..351 | 795 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23846125..23846219 | 524..616 | 330 | 94.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 198..239 | 47..88 | 120 | 76.2 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 47..88 | 120 | 76.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9582..9649 | 431..364 | 106 | 61.8 | Minus |
FMO04420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:00 Download gff for
FMO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 151..760 | 7..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:13 Download gff for
FMO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 260..869 | 7..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:46 Download gff for
FMO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5554-RA | 151..760 | 7..616 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:46 Download gff for
FMO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23845151..23845331 | 7..189 | 97 | -> | Plus |
| 2R | 23845535..23845696 | 190..351 | 99 | -> | Plus |
| 2R | 23845766..23845940 | 352..526 | 99 | -> | Plus |
| 2R | 23846128..23846219 | 527..616 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:00 Download gff for
FMO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19733651..19733742 | 527..616 | 94 | | Plus |
| arm_2R | 19732674..19732854 | 7..189 | 97 | -> | Plus |
| arm_2R | 19733058..19733219 | 190..351 | 99 | -> | Plus |
| arm_2R | 19733289..19733463 | 352..526 | 99 | -> | Plus |
