FMO04421.5prime Sequence
808 bp (808 high quality bases) assembled on 2008-07-30
> FMO04421.5prime
GAAGTTATCAGTCGACATGAAAGATACAATAATCCTTCTGGTGCTCCTGC
AGATCATCGGATCGTTGCAAGGCCAAATTCTCCCAAAGGAAATTAAGAAG
TGCCGCTTTGGAGATTCTAAGTGCATTGTTAATTCCATGAATGCTATAAT
AAAGAATTATCCCAAAGGCATACCGGCGATCGGATTGAAGCCCATTGATG
TGGTGGACATTAGGGACTCAAAGTTCTGGAATGATGCAATGGTAGGCGCC
TTCTGGTTGAACTTCGATCTGTTCAATCAAGTGAACTACGGCTTCGAGAA
CACGACGATCACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCT
TGATTGAAATACACGGCCGGATACCCAGTCTAATCCATAAGGGCGATTAC
TTCAGTATGGGAAGGGTGTGGATTGTACAGATGAATTCCACGGGGGAATC
CCTTTCGGATTTTCAGAACTTTCGCTTTGTTCTCAAATTGAAGGTCATAA
TGGAGTATCGCAATAATAAGCGCTACTTGAAGATATACGAGCTAACCCCC
TTCGTGACCATGGACCGATGGGTATTCTGGCTAGACAACTTTTTCGAATC
CAACACGGATATGACGATAGCCATTAATCAGGTGTTCAATCTGCACTGGG
TTGAGTTTTGGAACGAGCTGGAGCCCACAAACCTGAAAATATTCGCCGGT
GTGTTTCGCTCCGTTTTCGAGGATATTTTCAAAAAGGTCCCATACGATGA
CATGTTCTAACCGATTTCCAAAGAGTTCGAAGTAAATGATGCAAGCTTTC
TAGACCAT
FMO04421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..818 | 17..790 | 3840 | 99.7 | Plus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 567..84 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 21046049..21046272 | 790..567 | 1105 | 99.6 | Minus |
| 3R | 32079331 | 3R | 21046917..21046983 | 83..17 | 320 | 98.5 | Minus |
| 3R | 32079331 | 3R | 21048315..21048421 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:52 has no hits.
FMO04421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:24 Download gff for
FMO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..823 | 6..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:50 Download gff for
FMO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 39..826 | 6..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:36 Download gff for
FMO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..823 | 6..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:36 Download gff for
FMO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046044..21046271 | 568..795 | 98 | <- | Minus |
| 3R | 21046336..21046819 | 84..567 | 100 | <- | Minus |
| 3R | 21046917..21046992 | 6..83 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:24 Download gff for
FMO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16871766..16871993 | 568..795 | 98 | <- | Minus |
| arm_3R | 16872058..16872541 | 84..567 | 100 | <- | Minus |
| arm_3R | 16872639..16872714 | 6..83 | 93 | | Minus |
