Clone FMO04427 Report

Search the DGRC for FMO04427

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:27
Vector:pMK33-CFH-BD
Associated Gene/Transcriptnec-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04427.5prime Sequence

619 bp (619 high quality bases) assembled on 2008-07-30

> FMO04427.5prime
TTATCAGTCGACATGGCGAGCAAAGTCTCGATCCTTCTCCTGCTAACCGT
CCATCTTCTGGCTGCTCAGACCTTCGCCCAGGAGCTCATCTCTTGGCAAC
GGCAACAACAACAGCAGCAACAGCAGCAACTGCAGCTACAGCAGCAACTG
CTGCTGCAGCAGCAACAACACCAACGTAACCCAAGACCGGAGCTGGGCCT
CCGTTCCCTGCCCGGAAACCCGTGGACCCAGAACAATCAGGAAGCCATAA
GCGATGTGGTGGCGGTGGACCTAACCAAACGTGAGCCGGTCACTCCGCCA
CCCAATCGCCCGCCGCCCGTCTTCAGCTACATGGACCGCTTCAGCTCCGA
GCTCTTCAAGGAGATCATTAAGTCGCAAAGTCAGCAGAACGTGGTGTTCT
CGCCCTTCTCCGTCCACGCGCTGCTGGCCCTGATCTACGGGGCCTCGGAC
GGAAAAACGTTCCGGGAACTGCAGAAGGCCGGAGAGTTCAGCAAGAACGC
CATGGCCGTGGCCCAGGACTTCGAGAGCGTGATCAAGTACAAGAAGCATT
TGGAGGGCGCAGATCTGACCCTGGCAACCAAGGTCTACTACAACCGCGAG
CTGGGTGGCGTCAACCACA

FMO04427.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
nec-RA 1633 CG1857-RA 93..701 11..619 3030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7157475..7158065 619..29 2940 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:07:58 has no hits.

FMO04427.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:18 Download gff for FMO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
nec-RA 86..700 3..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:39 Download gff for FMO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
nec-RA 73..687 3..618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:21 Download gff for FMO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
nec-RA 86..700 3..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:21 Download gff for FMO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7157476..7158065 29..618 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:18 Download gff for FMO04427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3044981..3045570 29..618 99 <- Minus