FMO04428.5prime Sequence
1229 bp (1032 high quality bases) assembled on 2008-07-30
> FMO04428.5prime
ACATTATACGAAGTTATCAGTCGACATGGCCGGAGAAACAGAGCAGCTAA
CGTTGCTTAGTGAACTGAACAATATTGGAGGTGGCGAGTTCGAGTCGGGA
TACTGCCTGAATGAGAAACCTATTCTGCCGCCAGTGATGACTGACTGGAA
GAGACTGGAAATGATGCGACTGCGCTTGTGCGCCTTAACCAAGGAGGTGG
TCCAGAAGAGGAACCAGATTACAAATCCTGAACGGAGGGATGCATCTACC
AATACAAAATCGCAACAAGGATTTGGTTGTCCGGTCATAATGGGACGCTT
CCGCCAGAGATTACAGCAATCGGAGACAATGATCTATGATCACACAGCCG
AGATGACCATGCAGATTTCTGCTCCGCCTAGCATGCCAATTGGGATGACT
TCTCAGCTGGTAATGGAGGATGCTTCTCTGACTCCGCCGCAAAGAGTTGT
TGTCACGCTGACACCCGTGAAGTTGGCCACAGCAGAGAGTGTTTGGGTGA
CCAAGTTGGATCCACCGAAGGCGGAGAAACCCAAGCCAACGGAGAATGTC
CTGGAACCACTTCATCGGAGCTCTACCAGTCCTGATCTTTCGAAGCTTCA
TCACCAACTGTGGCGAAGAGATCTGATGCAGATTCCCAAGTCACAGTTTA
CTTTGCCTATAAAATGTGAGCCACAAAGTGTACAAGGTATCGAGCAGCAG
CAACCCAATAAGCTTACGACAATCAGGAGTCCCAGTCGAATCCCGAAACT
GATTACCAGCCATGTGGCCAACAGTGCCAGTGTCACCAAAACCCAGAGTG
CCTACCAGGCCCGACGCACCTATGACGCCAAAGTGGCTGCCAAGCGAAAA
ATTCTGGTGAGCAGGGGCCAGATTTCCTCAGTCAAACAGAAACCTCTGCC
TGATACCAGCCACTTGATGTGCCGAAAAGCATCAGGACTCCAGTGCCGGT
CTATAAAGACAGGATATGTGCAGGACGAAGAAGCAAATTCAAAGAATCGC
CTTCAAGTCCTTGATTCCTCGCAGGCGGAGAAAACAGGCGTATCCAGACA
AAATGCAACAGAGCCACAGGGCCTCATTCGCTACCATGATGACGATCCTC
AACACGCCGTCGAGATCTCGAACGATATAGGTCCTTGGAGAAGCATTGCA
CCTGTACTCAGACTCAGGCATCTAGCGGAGGCTAAGCTTCTAGACCATTC
TCGTTTTGGGCGCGCGCGGCGCCCCAGGA
FMO04428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RA | 1734 | CG2267-RA | 196..1339 | 24..1159 | 5250 | 98.1 | Plus |
| CG2267-RB | 1731 | CG2267-RB | 196..1336 | 24..1159 | 5195 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30627636..30628667 | 1159..136 | 4320 | 97 | Minus |
| 3R | 32079331 | 3R | 30628721..30628833 | 136..24 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:33 has no hits.
FMO04428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:01 Download gff for
FMO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1339 | 17..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:55 Download gff for
FMO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1339 | 17..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:26 Download gff for
FMO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1339 | 17..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:26 Download gff for
FMO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30627636..30628666 | 137..1159 | 97 | <- | Minus |
| 3R | 30628721..30628838 | 17..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:01 Download gff for
FMO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26453358..26454388 | 137..1159 | 97 | <- | Minus |
| arm_3R | 26454443..26454560 | 17..136 | 96 | | Minus |
