FMO04429.5prime Sequence
621 bp (621 high quality bases) assembled on 2008-07-30
> FMO04429.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTTTTATGCC
TGCTCTAAACTTGCTTGTGTACAACGTACTTGTAGGTTACATAAGCATGG
AAATCAATCGAATCATAAATGTTTCTACAGCCCAGACAAGTCTTTGGCAG
AATATTCCTATTATCGGCCAGATGTTCGCTCCGTTACAACCGGAAACCAA
TTATGGAGTGGAGTTCGGGGAAAGCATGTGGGACTTTAACCTATATGTAA
ACATCTTACTGCTTCTCCCCGCATTTTTTCAGATCTATCACATCTCCTTG
CTGGTGGCGATTGTTCTCATGTGGAACTGCTACCTTCACCAGTGTCTGGC
TGCTTTCCACCTGAAGATGGTGTGGCACTTGTGGTGGAGCGACCTATGCT
GGAGCTACTACGCTTCTCTTGTCCTTTTCGGATTCCTGTTGACCATGCTG
CACTTTAGTCTGATTATAGCAACCGTTATGTATCAGATGCAGATCGACGG
AGATCCCAAACCTCGGATCCAGTCCGAGGCTCTCCCAGAGCAGCAGCCAC
ATCCCGCAGAGGAAATTCAGGAACGAATGGCAATGGCCCAGACCATTAAG
ATCGCAAGCTTTCTAGACCAT
FMO04429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11404-RA | 806 | CG11404-RA | 22..590 | 35..603 | 2845 | 100 | Plus |
| CG11404-RB | 797 | CG11404-RB | 22..581 | 35..603 | 2700 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22548803..22549126 | 280..603 | 1620 | 100 | Plus |
| 3L | 28110227 | 3L | 22548591..22548752 | 121..282 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 22548458..22548544 | 35..121 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:16:30 has no hits.
FMO04429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:03 Download gff for
FMO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 11..593 | 25..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:56 Download gff for
FMO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 11..593 | 25..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:30 Download gff for
FMO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11404-RA | 11..593 | 25..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:30 Download gff for
FMO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22548592..22548752 | 122..282 | 100 | -> | Plus |
| 3L | 22548453..22548544 | 30..121 | 95 | -> | Plus |
| 3L | 22548806..22549129 | 283..607 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:03 Download gff for
FMO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22541553..22541644 | 30..121 | 95 | -> | Plus |
| arm_3L | 22541692..22541852 | 122..282 | 100 | -> | Plus |
| arm_3L | 22541906..22542229 | 283..607 | 99 | | Plus |
