FMO04431.5prime Sequence
1243 bp (1050 high quality bases) assembled on 2008-07-30
> FMO04431.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCCATTGAAGTG
GTCCCTGCTACTCGGCACTTTTGTGCTCATCAGCTGCTCCTCCGTGGAAG
CAGCCGTCACAGTGGGTCGGGCCTGCAAGGTGACGGATACCATGCCCGGT
ATCTGCAGAACATCCTCCGATTGTGAGCCCCTAATCGATGGCTACATCAA
GTCGGGAGTCCTGACGCTCAACGATGTGCCCAGCTGTGGCCTCGGCGCTT
GGGGTGAGATCTTCTGCTGTCCCACCAAGCCGTGCTGTGACAATAGTACC
ATAACAAGCGTTTCCACAAGCTCCACCACAAGCACAAAAGCTCCAATGAC
CAGTGGTCGTGTCGATGTGCCCACGTTCGGAAGCGGTGATCGCCCAGCAG
TGGCAGCCTGCAAGAAGATTCGCGAGCGAAAACAGCAGAGGAGCGGCAAT
CAATTGGTCATACACATCGTGGGCGGTTATCCGGTTGATCCGGGTGTATA
TCCCCATATGGCGGCCATTGGTTACATCACTTTTGGCACCGATTTCCGAT
GCGGCGGATCGCTAATCGCCAGTCGCTTCGTCCTGACCGCCGCACATTGT
GTCAACACCGATGCCAATACGCCGGCCTTTGTTCGCTTGGGAGCTGTGAA
CATTGAAAATCCAGACCATTCCTACCAGGATATCGTCATACGAAGCGTTA
AGATCCATCCGCAGTATGTGGGCAATAAGTACAACGATATCGCCATTTTG
GAACTGGAACGTGATGTCGTCGAGACGGATAACATCCGGCCCGCTTGTCT
CCATACGGATGCCACCGATCCGCCATCGAACTCCAAGTTCTTTGTCGCCG
GTTGGGGCGTCCTAAATGTAACCACTCGGGCGCGATCTAAGATCCTGTTG
CGCGCTGGTCTGGAGCTGGTGCCTCTGGACCAATGCAATATATCCTATGC
GGAGCAGCCCGGTTCCATAAGGTTGCTCAAGCAAGACGTGATCGATTCGT
TGCTGTGCCGCCATTGATCAAAAGCTCATCGCGACCGCATGCAGGGCGAC
TCGGTGGGTTGCTCAATCATGGAGCCTCAACGTGAAGACGGCATGTACAC
CATCATGGGCGTCATTCTCGTCGGAATCCGGATGCCCCACGTTCCACCGG
AAATCTTATACGCGTTTCTGTCTATCCGACTTATTCGAGGCATGTCCTGG
CCCGGACCATGTCGGGGTGTCACAGACCTCTCTCTGTAACGCA
FMO04431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psh-RA | 1645 | CG6367-RA | 299..1430 | 37..1169 | 5205 | 97.8 | Plus |
| Hayan-RD | 2290 | CG6361-RD | 1518..1991 | 492..959 | 365 | 73.3 | Plus |
| Hayan-RB | 2408 | CG6361-RB | 1518..1991 | 492..959 | 365 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18485296..18485581 | 690..405 | 1430 | 100 | Minus |
| X | 23542271 | X | 18485813..18485999 | 296..110 | 935 | 100 | Minus |
| X | 23542271 | X | 18485054..18485237 | 874..691 | 920 | 100 | Minus |
| X | 23542271 | X | 18484731..18484995 | 1140..875 | 820 | 92.2 | Minus |
| X | 23542271 | X | 18485645..18485756 | 406..295 | 560 | 100 | Minus |
| X | 23542271 | X | 18486063..18486138 | 112..37 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:58 has no hits.
FMO04431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:27 Download gff for
FMO04431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1412 | 37..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:58 Download gff for
FMO04431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1412 | 37..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:41 Download gff for
FMO04431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psh-RA | 299..1412 | 37..1150 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:41 Download gff for
FMO04431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18485813..18485996 | 113..296 | 100 | <- | Minus |
| X | 18486063..18486138 | 37..112 | 100 | | Minus |
| X | 18485296..18485579 | 407..690 | 100 | <- | Minus |
| X | 18485645..18485754 | 297..406 | 100 | <- | Minus |
| X | 18484720..18484995 | 875..1150 | 92 | <- | Minus |
| X | 18485054..18485237 | 691..874 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:27 Download gff for
FMO04431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18378753..18379028 | 875..1150 | 92 | <- | Minus |
| arm_X | 18379087..18379270 | 691..874 | 100 | <- | Minus |
| arm_X | 18379329..18379612 | 407..690 | 100 | <- | Minus |
| arm_X | 18379678..18379787 | 297..406 | 100 | <- | Minus |
| arm_X | 18379846..18380029 | 113..296 | 100 | <- | Minus |
| arm_X | 18380096..18380171 | 37..112 | 100 | | Minus |
