FMO04432.5prime Sequence
1127 bp (875 high quality bases) assembled on 2008-07-30
> FMO04432.5prime
CCTAAAAGGAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGG
TCCCGACTACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCC
GACTAAACGCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCC
ATCTGCTCCTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGT
GCAGGTGCCATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGC
CTTCTAGCGCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCG
ACGATAGTCGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGAC
GGGACGGCAAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGG
CAGTGCTCTACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTG
GATCCTAATGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGT
CCAGTTGCAACAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGC
AGCAACAGCAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAG
CAGCAGCAACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCA
GAGCGTGAGTCCAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCT
CCTCTGTGCACTGGCATCAAATGCAACGCCCCCGAAACTTACAAACCGCC
CACCGCTTCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGC
CGGGCGCCTACTACGCGAGATGATGCACGGCGTACGGCCGCTCCAGCGGC
GGAATACAAGTTCCCGCCGGCCATCAGCGTGCATAGACTGGTCGCCGCAG
GTGCAGCGGAAGTTTGCTCGAGACGCAGGAACTCATAAAATCTCTTGCCC
GCAGCTGTATGCGGCGGGCTAAGGCAACCCAGGACCACCGATTCCCAATC
CCAGCAGGAACCCCACTAGACTTATACCCACCTGGAGACTCAGTTTCTCG
CCAGGAAACTCTCGGCAAGCTTATCAGACCATTCGTTTGGCCGCCTGGGA
CCCGGTTAATGTGCCCATAATCCTTAT
FMO04432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tow-RF | 1988 | CG14821-RF | 787..1828 | 24..1064 | 4705 | 97.3 | Plus |
| tow-RD | 2654 | CG14821-RD | 802..1843 | 24..1064 | 4705 | 97.3 | Plus |
| tow-RC | 1508 | CG14821-RC | 307..1348 | 24..1064 | 4705 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6947246..6947910 | 47..710 | 3260 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6948277..6948486 | 836..1045 | 665 | 92 | Plus |
| 3L | 28110227 | 3L | 6947985..6948107 | 714..835 | 520 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:18 has no hits.
FMO04432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:00 Download gff for
FMO04432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 300..1332 | 16..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:41 Download gff for
FMO04432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 290..1322 | 16..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:04 Download gff for
FMO04432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tow-RC | 300..1332 | 16..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:04 Download gff for
FMO04432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6948278..6948460 | 837..1020 | 93 | == | Plus |
| 3L | 6947248..6947915 | 49..714 | 99 | -> | Plus |
| 3L | 6947986..6948109 | 715..836 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:00 Download gff for
FMO04432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6941378..6941560 | 837..1020 | 93 | == | Plus |
| arm_3L | 6940348..6941015 | 49..714 | 99 | -> | Plus |
| arm_3L | 6941086..6941209 | 715..836 | 95 | -> | Plus |
