Clone FMO04433 Report

Search the DGRC for FMO04433

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:33
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5778-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04433.5prime Sequence

388 bp (388 high quality bases) assembled on 2008-07-30

> FMO04433.5prime
TACGAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCG
CTTTTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGT
TGCTACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGG
TGGCAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCG
GTGGAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCA
GTATATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGGGGAGGAGG
TGGAGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTC
TTACGCAGATTATAAGCGGCGCAAGCTTTCTAGACCAT

FMO04433.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-RC 503 CG5778-RC 75..425 20..370 1740 99.7 Plus
CG5778-RA 657 CG5778-RA 75..425 20..370 1740 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22085606..22085865 370..111 1285 99.6 Minus
3R 32079331 3R 22086229..22086323 114..20 475 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:03:16 has no hits.

FMO04433.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:20 Download gff for FMO04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 12..378 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:59 Download gff for FMO04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 12..378 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:25 Download gff for FMO04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 12..378 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:25 Download gff for FMO04433.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22086233..22086331 12..110 97   Minus
3R 22085599..22085865 111..378 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:20 Download gff for FMO04433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17911955..17912053 12..110 97   Minus
arm_3R 17911321..17911587 111..378 98 <- Minus