FMO04435.5prime Sequence
830 bp (830 high quality bases) assembled on 2008-07-30
> FMO04435.5prime
CCTTATACGAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGT
TTACCTTGGCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGC
TCCAGCGACCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAG
CAGCTCTTGGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTA
CCACAAGCTGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGG
CGACCGCCGAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGA
CTGATGAACGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGG
AGTTATCAACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAG
GCGGAAAGGGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAG
CCCACAGCTATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCAC
ATTCACCAGAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAG
GCTTCCTTACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGAT
ATTGGCAACAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTT
CAACCGGGTGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCT
CAGCAATAGAGACGTCCAAAAAATGGAAACTGTCCTCATGCTGGAGATGG
GTGAGACGACGGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGGA
TAATGCAAGCTTTCTTGAACCATTCGTTTG
FMO04435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4842-RA | 934 | CG4842-RA | 65..845 | 21..804 | 3845 | 99.6 | Plus |
| CG18814-RB | 956 | CG18814-RB | 66..783 | 40..756 | 1185 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16369148..16369424 | 520..798 | 1300 | 98.6 | Plus |
| 3L | 28110227 | 3L | 16368606..16368835 | 116..345 | 1150 | 100 | Plus |
| 3L | 28110227 | 3L | 16368904..16369078 | 345..519 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 16368453..16368550 | 21..118 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 16370060..16370251 | 154..345 | 480 | 83.3 | Plus |
| 3L | 28110227 | 3L | 16370307..16370479 | 347..519 | 385 | 81.5 | Plus |
| 3L | 28110227 | 3L | 16369891..16369952 | 40..101 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:13 has no hits.
FMO04435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:20 Download gff for
FMO04435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4842-RA | 62..848 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:16 Download gff for
FMO04435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4842-RA | 44..830 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:30 Download gff for
FMO04435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4842-RA | 62..848 | 17..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:30 Download gff for
FMO04435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16369148..16369432 | 520..808 | 98 | | Plus |
| 3L | 16368608..16368835 | 118..345 | 100 | -> | Plus |
| 3L | 16368905..16369078 | 346..519 | 100 | -> | Plus |
| 3L | 16368450..16368549 | 17..117 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:20 Download gff for
FMO04435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16361708..16361935 | 118..345 | 100 | -> | Plus |
| arm_3L | 16362005..16362178 | 346..519 | 100 | -> | Plus |
| arm_3L | 16361550..16361649 | 17..117 | 99 | -> | Plus |
| arm_3L | 16362248..16362532 | 520..808 | 98 | | Plus |
