FMO04437.5prime Sequence
1205 bp (994 high quality bases) assembled on 2008-07-30
> FMO04437.5prime
GTTATCAGTCGACATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAATCT
CAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAGGTC
TTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAAGGA
TTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCCGCA
AGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAACGTG
CCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCCACG
GCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCAAGG
ATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCGGTG
AATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAACCTC
AGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGGAGT
TTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATCGAT
TTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCATAGT
GGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTCGGA
GGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGACTG
CACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAGCTT
CTTTAACTTTGATCCCCTTTCTGATAATCTCACATTGGTGGGCAGACCTT
CCGCTGGGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAGCCCG
ATGGCAGCAGGGATGTCTTCTTCCATCCTATGGCCAGCAACGAATGAGTT
GTGGTTAGCACAGGTCTGCAGCAGGAATTCAATGCAGCACGTTCTGATCA
TGGAAACGACTTCCATCTTCTGGGAACTCGTGGTTCCGTCCACCCAGTCC
CACATGCATAATACGATCCGGCGAACGGGGTGATTTCTTTGGCCAAGGTC
AAGAAAGGTGGAGTGGGCTGCTGAAACCAGCAGCGTCTCAACGGAAAACA
TGCTCCGTTATTCCAATCACTCGGAAAAGAGATTATCAAGCAATTGGACT
GCAAGAAGGGTAATTGGGGGATGTCCAACTCTCCTACCACCCTCTGGTGT
GACCT
FMO04437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-f-RA | 1439 | CG18550-RA | 57..1172 | 14..1117 | 4990 | 97.5 | Plus |
| yellow-f-RB | 1406 | CG18550-RB | 218..1139 | 208..1117 | 4020 | 97 | Plus |
| yellow-f-RC | 1391 | CG18550-RC | 217..1124 | 222..1117 | 3950 | 96.9 | Plus |
| yellow-f-RB | 1406 | CG18550-RB | 57..219 | 14..176 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12991829..12992399 | 1073..507 | 2260 | 95.8 | Minus |
| 3R | 32079331 | 3R | 12992466..12992797 | 506..175 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 12992983..12993145 | 176..14 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 12993824..12994319 | 999..507 | 515 | 75.9 | Minus |
| 3R | 32079331 | 3R | 12994430..12994695 | 504..239 | 505 | 79.3 | Minus |
| 3R | 32079331 | 3R | 12994977..12995073 | 142..46 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:54 has no hits.
FMO04437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:46 Download gff for
FMO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f-RA | 57..1151 | 14..1099 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:20 Download gff for
FMO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f-RA | 57..1151 | 14..1099 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:06 Download gff for
FMO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f-RA | 57..1151 | 14..1099 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:06 Download gff for
FMO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12991798..12992399 | 507..1099 | 95 | <- | Minus |
| 3R | 12992466..12992795 | 177..506 | 100 | <- | Minus |
| 3R | 12992983..12993145 | 14..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:46 Download gff for
FMO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8818705..8818867 | 14..176 | 100 | | Minus |
| arm_3R | 8817520..8818121 | 507..1099 | 95 | <- | Minus |
| arm_3R | 8818188..8818517 | 177..506 | 100 | <- | Minus |
