Clone FMO04439 Report

Search the DGRC for FMO04439

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13319-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04439.5prime Sequence

445 bp (445 high quality bases) assembled on 2008-07-30

> FMO04439.5prime
TAGCATACATTAAACGAAGTTATCAGTCGACATGGATAGCGTTCCTGCGA
ATGTTGTGCCTGCGAAGGAGTCTGGTGGTTTCACCTCACATTGCGTCCAC
TTGGCGGCGGGTCCCTCGCAATTCACCGTGCGCGCCCTGAAAATGCAAGG
CAGCACCATGCTGATCATAAACCCCAAGGGATTGGAGGTTTTCGAGGAGC
TAGCGGTGGCCATGCCCTCTCGCAATCCCGCCAGCAGCCAGTCCCTATCC
TCCACAATCCTGGGCGGACACGGGCAGACCGACTCATCTGTTCTGGCCGC
CAAATTGAGTAAACGCTACTGCCGCCAGTTCTACGTGAGCCTTAATCTCA
AACTGGATCGATTAATGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTAC
ATGCAAGACCATCTGGAGCACTTCGCTGCAAGCTTTCTAGACCAT

FMO04439.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..441 32..427 1980 100 Plus
CG13319-RA 691 CG13319-RA 46..441 32..427 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924344 32..427 1980 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:08:43 has no hits.

FMO04439.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:52 Download gff for FMO04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 23..427 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:42 Download gff for FMO04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 23..427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:04 Download gff for FMO04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 23..427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:04 Download gff for FMO04439.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12923940..12924344 23..427 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:52 Download gff for FMO04439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811445..8811849 23..427 99   Plus