FMO04440.5prime Sequence
1217 bp (1037 high quality bases) assembled on 2008-07-30
> FMO04440.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCGCCTACTCGTG
TCCAATTGCGGCAGGAGCAGCGACATATTTAGTCGCCACCTGCTGCAGCC
CACGCAGCAGCCACTGCCACGCCTCCAGAATGCCGCCCGCCTGATGCGCC
AACATTTGCGTGGAACGAACGCTCCCCAACCGCCCGCGATACCGCCCACA
AATGCCAGCCGCCTGCTGCAGACGACACGCCTGCTTGTGTGGGGCGGTGG
TAGTTTAGCTATCGGTCTGGGCGCCCGTTCCTGGTGGGCGGGGCATCGCG
GAGCGATCGTTCATTGCGAAGGCAGCCGGCTGGCCATTCGAAAGGAGGAG
GAGGAGGAGGACACTGCGTCGGAGCAGCACTTCGACTGGAAGCGTTTGTG
GACCTACTTGGAGCCACATCTCTGGGAGCTGATCGGGGCCGTATGCGCCG
CCCTGATAGTGGCTTATATCAACATACGCATCCCAAATCTTCTCGGTGAC
CTGGTAAACACACTGGCCAGATATGCCAACACGTACGTGATGGATCCGAT
TAACAACTCGTTCGTAAAGGACGTGAGCAAACCGGCCAGCAATCTGCTGA
GCCTATACATGCTGCAATCTGGTTTCACCTTTATGTACATCTACCTGTTG
AGCCGCGTCGGTGAGCAGATGGCAGCCAAGATGCGGCAGGATCTGTTCAC
GCAGATTGTCGTCCAGGACATCGCATTCTTCGATGAGAATCGAACGGGCG
AGCTGGTCAATCGACTAACCGCCGATGTACAGGACTTCAAGACCTCGTTC
AAGCAGTTCGTCTCCCAGGGACTGCGAAGTGCTGCCCAGCTGATTGGCGG
CAGTATATCGCTCTTCATGATTTCACCGCACATGGCCGCCATTGCGCTGG
CCAGCGTTCCGTGCGTGGTTATGTTCATGACGTATTTGGGCAAGAAACTG
CGCTCTCTAGCAAAAGCTCACAGCGCAGCGGACGAGCGACGGTGTCTGCG
AGGAGGCGCTGTCCACATCGACGTAGATCCAGTGCCTGTGAATACCGCGA
GATGCAGCTGTTCGAGGCGGAAACCATGAGCCGCTCGCCTTGAGCAAAAC
CTCGCTACGGCATCCATCTTCAGGCCTGACCACTTCTTTCTCATACCTAG
TCCTATCTACGCTCTTTAGGGCGCCACCTCATGTCCTCACGAGAAGACTC
TGTCTCCCTCGGGTGCA
FMO04440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 79..1253 | 33..1185 | 5230 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12594253..12594892 | 1076..447 | 2745 | 97.8 | Minus |
| X | 23542271 | X | 12594967..12595336 | 447..78 | 1850 | 100 | Minus |
| X | 23542271 | X | 12595497..12595546 | 82..33 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:06 has no hits.
FMO04440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:19 Download gff for
FMO04440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..1127 | 26..1071 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:43 Download gff for
FMO04440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 87..1142 | 26..1071 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:23 Download gff for
FMO04440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..1127 | 26..1071 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:23 Download gff for
FMO04440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12594258..12594892 | 447..1071 | 98 | <- | Minus |
| X | 12594968..12595331 | 83..446 | 100 | <- | Minus |
| X | 12595497..12595556 | 25..82 | 91 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:19 Download gff for
FMO04440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12488291..12488925 | 447..1071 | 98 | <- | Minus |
| arm_X | 12489001..12489364 | 83..446 | 100 | <- | Minus |
| arm_X | 12489530..12489589 | 25..82 | 91 | -> | Minus |
