FMO04441.5prime Sequence
524 bp (524 high quality bases) assembled on 2008-07-30
> FMO04441.5prime
GCATACATTAAACGAAGTTATCAGTCGACATGAAGATAATAGCACTCTTA
GTATTGGCGAATCTGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACA
CGAAAGGCTGGTGACGTGGAGACTTCGAAATATTGTAAACAAGTATAAAT
ACTTAGCCACCGGAAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAAC
AACGCTGCTGCCCGAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTA
CTTCAAAGTATACGATGAACAACGCCAATTGCTTGAAGATAACATTACTC
AGCGCTTGAACACGCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAG
AGATGTGTCCGATTCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTA
CAAGTTCTCTAATCAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGA
AATGCTTTGCACCACCGGCGATACAAGAATATGATTATGATTACTATCTA
GGCTATGCAAGCTTTCTAGACCAT
FMO04441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17472-RA | 582 | CG17472-RA | 51..527 | 30..506 | 2385 | 100 | Plus |
| CG31680-RA | 527 | CG31680-RA | 30..205 | 30..208 | 355 | 81 | Plus |
| CG31680-RA | 527 | CG31680-RA | 243..391 | 282..430 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20634678..20635112 | 72..506 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 20639136..20639378 | 72..328 | 845 | 89.5 | Plus |
| 2L | 23513712 | 2L | 20639385..20639523 | 368..506 | 485 | 89.9 | Plus |
| 2L | 23513712 | 2L | 20640434..20640582 | 282..430 | 265 | 78.5 | Plus |
| 2L | 23513712 | 2L | 20640293..20640396 | 105..208 | 250 | 82.7 | Plus |
| 2L | 23513712 | 2L | 20634565..20634607 | 30..72 | 215 | 100 | Plus |
| 2L | 23513712 | 2L | 20640150..20640192 | 30..72 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:53 has no hits.
FMO04441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:31 Download gff for
FMO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 42..527 | 17..506 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:45 Download gff for
FMO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 1..485 | 21..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:25 Download gff for
FMO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17472-RA | 42..527 | 17..506 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:25 Download gff for
FMO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20634556..20634607 | 17..72 | 91 | -> | Plus |
| 2L | 20634679..20635108 | 73..502 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:31 Download gff for
FMO04441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20634556..20634607 | 17..72 | 91 | -> | Plus |
| arm_2L | 20634679..20635108 | 73..502 | 100 | <- | Plus |
