FMO04442.5prime Sequence
702 bp (702 high quality bases) assembled on 2008-07-30
> FMO04442.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCAGCACATACT
ACTTCTTACAGGACTGGCGCTGGTAGGCAGCATTTCCAGGGGAGCCGCCA
CCGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAACTCG
GACTACGCCTTCCGCCTGCACTCCCACGACGTCAAGTACGGATCTGGTTC
CGGGCAGCAGTCGGTGACGGGCGTGGAGCAGAAGGAGGACGTGAACAGCC
ACTGGGTGATCAAGGCGCAGACCGGCGAGCTTTGTGAAAGGGGCGAGCCC
ATCGCCTGCGGATCCACCGTGCGACTGGAGCACCTGTCCACCAAGAAGAA
CCTGCACTCGCACCACTTTTCGTCGCCGCTCTCAGGCGAGCAGGAGGTGT
CCGCGTACGGAACGGATGGACTCGGCGACACCGGCGACCACTGGGAGGTG
GTCTGCTCCAACGAGAACTGGATGCGCAGTGCCCACGTTAGGCTGCGCCA
CATCGACACCGGCATGTACCTGGGCATGTCCGGCCGCTCCTATGGCAGAC
CCATCTCCGGCCAAATGGAAATCGTTGGCGTCCACAAGCCGCAGCACGGA
ACGCGCTGGACCACGGCGGAGGGCCTCTTTATCGTGCCCAAGGAGAAGAG
CTCAACGCACGACGAGTACGCCCACTCGGAGCTGGCAAGCTTTCTAGACC
AT
FMO04442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 904 | CG11999-RA | 127..774 | 37..684 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5353847..5354434 | 684..97 | 2940 | 100 | Minus |
| 3R | 32079331 | 3R | 5354561..5354621 | 97..37 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:18 has no hits.
FMO04442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:00 Download gff for
FMO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..774 | 37..684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:02 Download gff for
FMO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..774 | 37..684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:11 Download gff for
FMO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..774 | 37..684 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:11 Download gff for
FMO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5353847..5354433 | 98..684 | 100 | <- | Minus |
| 3R | 5354561..5354621 | 37..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:00 Download gff for
FMO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1179569..1180155 | 98..684 | 100 | <- | Minus |
| arm_3R | 1180283..1180343 | 37..97 | 100 | | Minus |
