FMO04443.5prime Sequence
1216 bp (1047 high quality bases) assembled on 2008-07-30
> FMO04443.5prime
TAGCATACCTTAAACGAAGTTATCAGTCGACATGGCGCACATGTCCCACA
TGCTCCAGCAGCCTTCGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCA
TCGCGCACGATGTCCCTGATGGAGAAACAAAAGTACATCGAGGACTACGA
CTTTCCCTACTGCGACGAGAGCAACAAATACGAAAAGGTGGCGAAAATTG
GCCAAGGCACCTTCGGAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAAC
AAGAAGTTTGTGGCCATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGG
CTTTCCCATCACGGCTCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGC
ACGAGAACGTGGTGAATCTGATCGAGATCTGCCGCACCAAGGCCACCGCC
ACGAATGGTTACAGATCCACCTTCTATTTGGTCTTTGATTTCTGCGAACA
CGATTTGGCAGGTCTTCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCG
AGATTAAGAAGGTTATGCAGCAGCTTTTAAACGGTTTGTATTACATCCAC
AGCAACAAGATCCTGCACCGAGACATGAAAGCTGCCAACGTGCTGATTAC
CAAGCATGGCATCTTAAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTA
GCATTCCAAAGAACGAGAGTAAGAATCGCTATACCAATCGCGTAGTAACC
TTGTGGTACCGGCCGCCTGAGCTGCTACTTGGTGACCGCAACTATGGTCC
ACCCGTGGACATGTGGGGAGCCGGCTGCATAATGGCCGAGATGTGGACAC
GCTCGCCCATCATGCAAGGCAATACGGAGCAGCAGCAGCTAACCTTTATC
TCGCAGCTATGCGGCTCCTTTACGCCGGACGTGTGGCCGGGAGTGGAGGA
GCTGGAGCTGTACAATCCATCGAGCTGCCAAAGATCCAGAAGCGTCGAGT
CAAGGAGCCGCCTGCGTTCGTATGTCAAGGGATCAAACCGGCTGTGATCT
AATTGGACAATTTGCTGACCCTTGATCCCAAGAACGCATCGATGCGGACC
ACAGCTCTGAATCACGACTTCTTCTGAACGATCCCATGCCCAGCGACCTG
AGCAGATGCTGTTCCAGCACTGCGGCATGTCGGATACTGGCAGCCGCCGA
ACTCGAAGAGTGCCCACTATCCACGACACTGACACCCTGGAACCTGAAGC
CTCAGACACGAGTATA
FMO04443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk9-RA | 1476 | CG5179-RA | 137..1226 | 31..1120 | 5180 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22636313..22636875 | 1120..558 | 2345 | 97.5 | Minus |
| 2R | 25286936 | 2R | 22636942..22637199 | 559..302 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 22637406..22637591 | 216..31 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 22637259..22637344 | 301..216 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:19 has no hits.
FMO04443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:23 Download gff for
FMO04443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 137..1239 | 31..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:43 Download gff for
FMO04443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 133..1235 | 31..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:33 Download gff for
FMO04443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk9-RA | 137..1239 | 31..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:33 Download gff for
FMO04443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22637259..22637343 | 217..301 | 100 | <- | Minus |
| 2R | 22637406..22637591 | 31..216 | 100 | | Minus |
| 2R | 22636330..22636873 | 560..1104 | 97 | <- | Minus |
| 2R | 22636942..22637199 | 302..559 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:23 Download gff for
FMO04443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18524911..18525096 | 31..216 | 100 | | Minus |
| arm_2R | 18523835..18524378 | 560..1104 | 97 | <- | Minus |
| arm_2R | 18524447..18524704 | 302..559 | 100 | <- | Minus |
| arm_2R | 18524764..18524848 | 217..301 | 100 | <- | Minus |
