Clone FMO04444 Report

Search the DGRC for FMO04444

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNpc2a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04444.5prime Sequence

481 bp (481 high quality bases) assembled on 2008-07-30

> FMO04444.5prime
TACGAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTG
CACTGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAG
ACGGGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGC
GGAGTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCG
CCCTGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTC
CTGGGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGA
CAGTGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGG
CCACCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAG
TGGGAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCC
CGCTAAAATTCAGGCAAGCTTTCTAGACCAT

FMO04444.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-RA 651 CG7291-RA 100..543 20..463 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1988389..1988832 20..463 2220 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:05:02 has no hits.

FMO04444.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:26 Download gff for FMO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..548 13..469 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:22 Download gff for FMO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
NPC2-RA 94..547 13..469 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:14 Download gff for FMO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..548 13..469 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:14 Download gff for FMO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1988384..1988837 13..469 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:26 Download gff for FMO04444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1988384..1988837 13..469 98   Plus