FMO04445.5prime Sequence
1211 bp (1019 high quality bases) assembled on 2008-07-30
> FMO04445.5prime
TATAGCATACATTAAACGAAGTTATCAGTCGACATGAGTGATACGCGTGA
GCAGATTCTGGAGCAAATCAAAGTGCAAGGCGATCTCGTCCGTCAATTGA
AAGCAGCGAAGGAGTCGAAGGAGAAGATCGATGAGGAGGTCGCCCGCCTA
CTGGCCCTAAAGGCCACTCTTGGCGGAGATGCCGCCCCCACCAATCAGAA
GTTCACGCTAAAGACGCCCAAAGGCACACGGGACTATGGTCCTCAGCAGA
TGACCCTGCGCCAGGGCGTCCTGGACAAGATCGTCCAGGTGTTCAAGCGC
CACGGCGGCGAAGCCATCGATACGCCCGTGTTCGAGCTGAAGGAAGTGCT
GACGGGCAAGTACGGCGAGGACTCAAAGCTGATCTACGACTTGAAGGATC
AGGGCGGTGAGATCCTATCGATGAGGTATGACTTGACCGTGCCGCTGGCT
CGTTACCTGGCGATGAACAAGATCTCGAGCATCAAGCGCTACCACATCGC
CAAGGTCTATCGACGCGACAATCCGGCAATGACCAAGGGTCGCTATCGGG
AGTTCTACCAATGTGACTTCGACATCGCCGGCACCTACGATCCCATGCTG
CCGGATGCCGAGTGCGTCAAGATTGTGTCGGAGATACTGGACACGCTGGA
CATTGGAGACTATGTGATAAAGCTAAATCACCGCCAGCTTTTGGACGGCA
TGTTCCAGGCGTGCGGAGTGCCGGCGGATAGCTTCCGCACCATCTGCTCA
GCGGTGGATAAGTTGGATAAGTCGCCCTGGGCGGATGTGCGCAAGGAGAT
GGTGGATGAGAAAGGGTCTGGACGAGGCAGCAGCGGATCGAATTGGCGAG
TACGTGCGACTGAGCGGCGGTGCCGAGCTGGTGGAACAACTGCTGGCCAA
CGAGAAGCTCAAGGCTGTGCCAAATGCCGTAAAGGGTCTGGGAGGGCATG
AAGCAGCTCCTTAGTACTGTTCCATATTCGGTCTGGATAAGCGAGTTAGC
TTCGATTTGAGTCTGGCCCGTGCTGACTACTACCCGGTGTTATCTACGAA
GGTGTGCTCAAGGAGAGTCCGCCACCGGTGGCATCTCGGCGAAGACATCC
AGCAAACGGAAAGCAGCCAACGACCGCACGTGGGATCGTGCCTGGAGCGT
CTTACACACTGGGTGGACAGTTTCGATCGCGCGCAGGCTGGTCTCTGCCT
GGGCCTGTTCA
FMO04445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-his-RA | 1978 | CG6335-RA | 163..1288 | 34..1147 | 5170 | 98.1 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 1138..2172 | 125..1147 | 4715 | 98 | Plus |
| Aats-his-RD | 2104 | CG6335-RD | 380..1414 | 125..1147 | 4715 | 98 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 163..255 | 34..126 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18518823..18519253 | 341..771 | 2155 | 100 | Plus |
| X | 23542271 | X | 18519313..18519646 | 770..1099 | 1225 | 96.4 | Plus |
| X | 23542271 | X | 18517809..18518027 | 125..343 | 1095 | 100 | Plus |
| X | 23542271 | X | 18515590..18515682 | 34..126 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:09 has no hits.
FMO04445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:52 Download gff for
FMO04445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1259 | 34..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:44 Download gff for
FMO04445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 192..1288 | 34..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:36 Download gff for
FMO04445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1259 | 34..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:36 Download gff for
FMO04445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18515590..18515682 | 34..126 | 100 | -> | Plus |
| X | 18517811..18518026 | 127..342 | 100 | -> | Plus |
| X | 18518825..18519253 | 343..771 | 100 | -> | Plus |
| X | 18519315..18519673 | 772..1123 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:52 Download gff for
FMO04445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18409623..18409715 | 34..126 | 100 | -> | Plus |
| arm_X | 18411844..18412059 | 127..342 | 100 | -> | Plus |
| arm_X | 18412858..18413286 | 343..771 | 100 | -> | Plus |
| arm_X | 18413348..18413706 | 772..1123 | 95 | | Plus |
