FMO04446.5prime Sequence
1212 bp (1030 high quality bases) assembled on 2008-07-30
> FMO04446.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTTTGGCAGCGGC
ACCAACAGCAGGACCTTCGCATGGCGGCTTGGCATTGACCGTGAGTTCGG
CCGGTGGCTACGATGGTACCAATCAATACGAGGAGAACGCTGAGCACTTG
CGTCAGCTGTTCAGCCAGAGCAAACTGGTGTCCTTTAGCATTGCCCACAT
CGCGTGCTCCGCGGGCAGTAGCAGTGGCGACAACTATATGTCCGTGGTGA
AGCGTGTAACCATCTCCCAGGCAGGAAAGGATCAGGATCCGGAGCTGGCT
GGCAGTGAAATCGTCACGGTCATTGTGAAGCGACAAATTGCGAGCCTTTC
GCGCCGGCAACTCTACCGATGCGAGGAGGCCTTCAGCAACGAGATCAACG
CCTATCGGCACTTGGCGCCCCTATTAGCTGCCCACAGTCGTCATCAGTTG
TTTCCGGTATGCCACATTGCGGAGAGTCAAGATCGGCGGGATGCGGAAGG
TGGAGAACCCATCATCGTGCTTCAGGACCTCAAAGCCATGGGTTTTCGCA
TGAAGGATCGTCTGGCGGGCTTGGAACTGAGCGACTGCCTTCTAGTGATG
AAGAAACTTGCACAACTCCATGCTGCCTCGCTGGCCGCTCAAGAGCTGGA
ATCCTCTTCCTTCGCCTTCCATGCTGATCATCTTCAAGAGATTGTCTACT
GCGATGAGGCGACGGACTTTTACGCCACCATTCTAGACACCTCCGTGCAG
CAGGCTCTGGAAAGTCTAGGCGACGCCAATGCAGACGACTGCTTGACCAC
GCCCATTCGATTGCTCGAGGAACTTCGTACCAATCTGTTTGAAAATCTAA
AGCACGAGATTAATGCCACTGCGGCGGCTCCAAACAGTGTGATCTGCCAT
GGTGACCTTTGGGTAAACAACATTATGTTCCGCTCTGAGCCAGAGGAGTG
ATCTTCTTCGACTGCAGGCCATGCGCAAGTCGTCGCTATTTTGACATCTC
ACTTCATTACCACAGCACGAGAAGGCCACTCAGGATTTGCACACGGAAAC
CTGCTGCGCTACTCGCAGCTTTGGAGTGAAGAACTAGCACAGCTGGAGAA
TACCACCGCTGCGAAGCTAAAAAACTATGTGAAGCATTCTCCTTGCACGC
TATCGGATAGTCACGGTCATATGGAACGTGCTATCGCGCAGTGTGGGATC
TCTCTCACGCGG
FMO04446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1386 | 34..1147 | 5040 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977828..8978285 | 1051..602 | 1840 | 96.5 | Minus |
| 3L | 28110227 | 3L | 8978350..8978640 | 603..313 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 313..34 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:35 has no hits.
FMO04446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:23 Download gff for
FMO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1261 | 31..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:19 Download gff for
FMO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1261 | 31..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:02 Download gff for
FMO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1261 | 31..1034 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:02 Download gff for
FMO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8977846..8978283 | 604..1034 | 97 | <- | Minus |
| 3L | 8978350..8978639 | 314..603 | 100 | <- | Minus |
| 3L | 8979348..8979629 | 31..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:23 Download gff for
FMO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8970946..8971383 | 604..1034 | 97 | <- | Minus |
| arm_3L | 8971450..8971739 | 314..603 | 100 | <- | Minus |
| arm_3L | 8972448..8972729 | 31..313 | 99 | | Minus |
