FMO04447.5prime Sequence
1004 bp (1004 high quality bases) assembled on 2008-07-30
> FMO04447.5prime
TATAGCATACATTAAACGAAGTTATCAGTCGACATGATGAACATGCTCTT
TGGCAATTGTGTGGGCAGCTGTGACCAGCTGGCCGGTCCACCGCCGGACT
TTATATTATCGATGCCGCCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAG
CCGGCGACGGTGGACATCCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTT
TGCCGCCTTCATGTGCGGCCATGGGATGCAGCACAACGAGAGCGGAAACG
CGCTAATGGAGCTGGTGAGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGG
CTGTTTGTCTCGTCCTGCATCGGGATCTTTGTGTTCGGCTGCTTCCTGGC
CCTCATCGTGATGCGGTGCAGAGACAGCTCCTTTTTCTCGTACCACGACG
CCAATATCAAGCAGACGGCCATTAATGCCCTCGGCGAGGCGACCAAATCC
AATGCCTTCACATCCGGCGGAATTCTTTATCCCTGCGCCACGGCCAACAG
TAGGGATCTGCTCCAGAGCCAGCTGGTCAACGATAGCCGTCTACTGTGGG
CCACACTAACGCCCCACGGCACCAGGCACTTCATCATCGAGAACTCCCAG
GATGGGCACTACGAATCGGTGGACTATCGCGGCAAGTCGCACAGCCAGGT
GTTCCGTGGCTACGAGAAGCATTCGCAGTCGTTTGTCAAGTCCTTTGACA
ACAATGGCTTCGTTGACTACGACTATGAGGATCCCACGCCATTGATGGAC
TCCTACCATGATGACATGGACTCCGGCTACCAGGAGCCGCACGAGGTGAC
TGGCTCCCTGAAGCGTTCGGCGATGCGAACTGTGGAATCACTGAACACTG
ACACCCCGACCAGCGGCGGTTCGAGCTCCAACTATCATACCAGCGCCAAT
CAGATCGGCAACACCAAGTCCATTAGCCGCAGACGACGCTGTCACGTCGC
ATCAGCGATGCCTCCTCCCAAAACGGAACATCCATGGCAAGCTTTCTAGA
CCAT
FMO04447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9919-RA | 1647 | CG9919-RA | 56..1010 | 33..986 | 4735 | 99.8 | Plus |
| CG9919-RB | 1644 | CG9919-RB | 56..1007 | 33..986 | 4680 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16329895..16330236 | 374..33 | 1710 | 100 | Minus |
| X | 23542271 | X | 16329515..16329830 | 690..375 | 1580 | 100 | Minus |
| X | 23542271 | X | 16329074..16329372 | 986..689 | 1430 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:20 has no hits.
FMO04447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:14 Download gff for
FMO04447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9919-RA | 51..1013 | 27..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:40 Download gff for
FMO04447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9919-RA | 32..994 | 27..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:36 Download gff for
FMO04447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9919-RA | 51..1013 | 27..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:36 Download gff for
FMO04447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16329070..16329370 | 691..990 | 98 | <- | Minus |
| X | 16329515..16329830 | 375..690 | 100 | <- | Minus |
| X | 16329895..16330250 | 18..374 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:14 Download gff for
FMO04447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16223103..16223403 | 691..990 | 98 | <- | Minus |
| arm_X | 16223548..16223863 | 375..690 | 100 | <- | Minus |
| arm_X | 16223928..16224283 | 18..374 | 97 | <- | Minus |
