FMO04449.5prime Sequence
397 bp (397 high quality bases) assembled on 2008-07-30
> FMO04449.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGCAGTTG
GATCCGCTTTGAGATCCCCAATAGTCGACATGTCCACCAAGCAGGCGAAA
TTCGTTGAAAACACCATTGCCAGCAACAAAGTGGTGATATTCAGCAAGAC
CTACTGTCCCTACTGCACGATGGCCAAAGAGCCCTTCAAAAAGCTCAATG
TGGACGCCACCATAATAGAACTCGATGGAAATCCCGATGGCAACGAAATT
CAGGCAGTTCTGGGCGAGATTACCGGTGCCAGAACGGTTCCCCGCGTCTT
TATCGATGGCAAATTCATTGGCGGTGGCACTGACATCAAACGAATGTTCG
AGACAGGAGCTCTGCAAAAATATTTCCAAGCAAGCTTTCTAGACCAT
FMO04449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6852-RC | 607 | CG6852-RC | 178..519 | 38..379 | 1710 | 100 | Plus |
| CG6852-RA | 595 | CG6852-RA | 166..507 | 38..379 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18869503..18869646 | 38..181 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 18869705..18869813 | 180..288 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 18869876..18869969 | 286..379 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:53 has no hits.
FMO04449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:57 Download gff for
FMO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6852-RA | 158..510 | 33..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:23 Download gff for
FMO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6852-RA | 40..392 | 33..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:01 Download gff for
FMO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6852-RA | 158..510 | 33..383 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:01 Download gff for
FMO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18869707..18869811 | 182..286 | 100 | -> | Plus |
| 3L | 18869877..18869972 | 287..383 | 97 | | Plus |
| 3L | 18869495..18869646 | 33..181 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:57 Download gff for
FMO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18862595..18862746 | 33..181 | 98 | -> | Plus |
| arm_3L | 18862807..18862911 | 182..286 | 100 | -> | Plus |
| arm_3L | 18862977..18863072 | 287..383 | 97 | | Plus |
