FMO04453.5prime Sequence
1202 bp (1058 high quality bases) assembled on 2008-07-30
> FMO04453.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGCGAAAGTTTCTCGGT
CTGCTGCTCACCGTGAGCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGA
GATTGAAGTGCCGCAGGAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAA
GCTCAGCGGAAATAAGCCATGCGAAGGACAGTGTTAGCAACTCAACCCTG
AAGTTGGTTCACGTGCTTTTTCGTCATGGTCCTCGAACTCCAGTGAGCAC
TTATCCCAACGATCCGTATATCAACGAAACCTACGAGCCCTTCGGTTGGG
GAGCACTCACCAATGGTGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAA
CTGCGGCAGCGCTATAAAGATTTCCTCCCGGCGTATTATCAGCCTGACGC
GATCCGTGCCCAATCTTCGGAGTCACCGCGCACCTTGATGTCTATGCAAA
TGGTCCTCGCCGGACTCTTTCCACCGGAGAACACTCCCATGGAGTGGAAC
CAGCTGCTCAATTGGCAGCCCATACCCATTGTGATGGAACCAGAGGAAAC
TGATGTGCACATTAGAATGAAGGCACCCTGCCCCCGATACGATGAGTCTG
TTCTGGAGGTAATAGAACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGC
TCGGATTTACTACGCGAACTGACCACTCACACCGGACTCAATATTACCCA
TGCCCACGATGTCACCAATGTGTTCATCACCCTGCTCTGTGAACAGACTT
TCGGCCTGCAGTTGCCCTCGTGGACCAATGACTACTTTCCGGAGAAGATG
CTACCCTTGGCTGAAAAGTCATATGTCTACGATGCCTATACGACCGAGCA
GCGCAAAATGAAAAGGGGTTTCTTCGTGGAGCTGCTGTTGAAGCAAATGC
AGGACAGGATCTCCGGGAGCATTGAAGCCAGCAATCGCAAGATGTTCCTT
TTCCTGCGGTCACGATTGGAACATCACAAATGTGCTATCCGCTTGAATGT
TTGGGAGGCTCAGATGCCCGCTCTCGTCGTGATTGCATTTGGCTGCATCA
AACCCGCAACTGGGGGAGTATTCTGAAATCTTACTCCAACGATCCCACAG
GAGCTTCAGCCAGCTGGCGAATCCGCTGCAGAAACAGGTCCATGGCAGTA
TGGACTTACAGGACTATCGAGTGCCCTTTATGCACGGATGTGGACGAAGC
CA
FMO04453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9451-RB | 1592 | CG9451-RB | 79..1197 | 33..1137 | 4960 | 97.3 | Plus |
| CG9451-RA | 1387 | CG9451-RA | 79..1197 | 33..1137 | 4960 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19498724..19499186 | 1019..557 | 2095 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19500538..19500720 | 215..33 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 19499256..19499414 | 557..399 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 19499622..19499722 | 315..215 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 19499474..19499558 | 399..315 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:16 has no hits.
FMO04453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:57 Download gff for
FMO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 79..1143 | 33..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:48 Download gff for
FMO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 93..1157 | 33..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:40 Download gff for
FMO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9451-RA | 79..1143 | 33..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:40 Download gff for
FMO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19499256..19499414 | 399..557 | 100 | <- | Minus |
| 3L | 19499475..19499558 | 315..398 | 100 | <- | Minus |
| 3L | 19499623..19499721 | 216..314 | 100 | <- | Minus |
| 3L | 19500538..19500720 | 33..215 | 100 | | Minus |
| 3L | 19498724..19499185 | 558..1019 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:57 Download gff for
FMO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19492356..19492514 | 399..557 | 100 | <- | Minus |
| arm_3L | 19492575..19492658 | 315..398 | 100 | <- | Minus |
| arm_3L | 19492723..19492821 | 216..314 | 100 | <- | Minus |
| arm_3L | 19491824..19492285 | 558..1019 | 98 | <- | Minus |
| arm_3L | 19493638..19493820 | 33..215 | 100 | | Minus |
