FMO04454.5prime Sequence
773 bp (773 high quality bases) assembled on 2008-07-30
> FMO04454.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTTCGTGCTGGCG
GAGCTGAAGGACAATGTGAGGATTGCGCCGGACCAGTTCCATCTGAAGTT
GGTGGACGCCGTGCGCGACGAGATCGACCGAAAGCTGGCCAATAAGGTCC
TTCTTAACGTGGGATTATGCATTGCGCTGAAGGATATTGTTTCACTGAAG
GATTCCATCATCCTGCCGGGAGACGGAGCCTCGCACACGGAGGTTCTGTT
CCGGTACGTGGTCTTCCGGCCGATGGTGGGCACCGTGATTACCGGAAAGA
TTCGAAACTGCAGCCGCGAAGGAGTCCATGTGACACTTGGTTTCTTCGAC
GACATCCTCATTCCGCATGCCGCCCTGCAGCATCCTTCGCGCTTCGATGA
GGCCGAACAGGCCTGGGTTTGGGAATATCCGCTCGAGGACGGCGCCAAAC
ACGATCTCTTCATGGACGTTGGCGAGCCCATCAAGTTCCGCGTATCACGG
GAGATCTTCGAGGAAACATCACCCATTGGACCACCGAAAACTGAGGCTCA
GACTCAGCAGGGAGCTAGCACATCCGCTGCAGTCGCATCAGCTACCTCCC
AAGAAGTGAAGACACCGTACAGGATTATTGGCGCCATTAACGAATCCGGC
CTAGGCGTGCTCTCCTGGTGGGATCAGCAGGGAAAGGACGATGAGCAGGA
CGACGAGGAGGACGAGGAGTACGATGACGAAGATGGCGAAGGCGCATGCG
AAGAAGCAAGCTTTCTAGACCAT
FMO04454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7339-RB | 1628 | CG7339-RB | 82..805 | 32..755 | 3560 | 99.4 | Plus |
| CG7339-RA | 967 | CG7339-RA | 82..805 | 32..755 | 3560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11649007..11649492 | 145..630 | 2385 | 99.4 | Plus |
| 3L | 28110227 | 3L | 11649554..11649676 | 633..755 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 11648837..11648953 | 32..148 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:23 has no hits.
FMO04454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:25 Download gff for
FMO04454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7339-RA | 76..812 | 26..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:25 Download gff for
FMO04454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7339-RA | 48..784 | 26..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:32 Download gff for
FMO04454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7339-RA | 76..812 | 26..762 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:32 Download gff for
FMO04454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11648841..11648951 | 36..146 | 100 | -> | Plus |
| 3L | 11649009..11649491 | 147..629 | 99 | -> | Plus |
| 3L | 11649551..11649683 | 630..762 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:25 Download gff for
FMO04454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11641941..11642051 | 36..146 | 100 | -> | Plus |
| arm_3L | 11642109..11642591 | 147..629 | 99 | -> | Plus |
| arm_3L | 11642651..11642783 | 630..762 | 96 | | Plus |
