FMO04455.5prime Sequence
1232 bp (1036 high quality bases) assembled on 2008-07-30
> FMO04455.5prime
ACTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGGTCGGT
GGAAGTGGCCCAAAGCGGCCCATCTGCCATCTTCTGGCTCGTCCAAGTGC
TAATCGTGGGGGCGGCACAGGCTGCCACGCCCTTCGCGAAAGAGTACCGC
AACGCGGGACTCTACAATGGCAACACACTCGTCGATCTGGACGGTTCCAC
CACCCTGGACATGGGCCAGGAGAAGCCCACCAGCAGCAGCAGCGGTCTCA
GTGGAGGCTTCAAGTCGGAGTCGTCGGTGGTGCTGCCCGGCATGCTGCAA
AATTCAGGCTGCCCGCTGACGACGAGTTCCCACTGCCTGCGCTGCAACAA
GGTGGGCTGCATCAAGTGCCCAATGTACCTGGTGACGGACACGAGGCAGT
GCGTGGATCAGTGCCCCGCCGGCTACTTGGACCAGTGGTCCGCCCACACG
GAGTTCATGGGTCGGGTGTGTGTACCCACCGGCTATTCTGGGCCACTGAT
GGCCGCACTGGCCGGACTTCTCGGTGGCTTCCTCGTTTGCCTGTCCCTTC
TGGCTGTCGCCGTGATGCTGGTCAAGAGGAAGAGGCGGCGAAAGTCCATC
AAACAGAAGCTCATCAACGAGAACACCATGGATCGGGCGGACTTCATGAG
GCAGCTAAACGAGATGCGTCCGAATGCGGAGTACTTTCTGGCCATGCTGA
ACGATACCCGGCGGCAGATCAGGAAGCTCTATTTGTCGGGTGAAGTGGCG
GCTGCCAACTCGTACAGGCCCATCGTCCGGGATCTGGCAAAGCTGCTGAT
TCTGCTAAACAGGCCCATTGAACTGATTCCCGCCCCGCCGCCAGATTGGT
CCAGGCTGTATGCCTGGTCGGAGCAGCCCTGAGCGTTACAAGCCGCAAGT
GGGTCAGCTTATCGACTTCTTTCAGCCTCACACGGTCACAGTGCTGGCCA
CCACGAGTGCTCTACGCTGCGCCGAACAAGAAGAAGCACTGCAGCAGCCC
AGCATCTTCGGCAACAGGTGACGCCCACGCGACGCGCAGGAAGTGGGCGA
ACTGATGGCGGGATCGGAACAGCAATGCTCGGCGCAACAAAGCTAACCTG
GTTGGGCTCGCTGATCGCTTTGCACGAGTTCGAGGAGCCGCGGCTCTCGG
ATTCTTTCGGACGAGTTCAACGCGTGAAGAGCGCATTCCATCTCTGGAAT
CCAACGCCTACGTCGTCTTTTGTGCTATGATG
FMO04455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-RB | 2449 | CG5507-RB | 660..1833 | 40..1196 | 5100 | 96.9 | Plus |
| T48-RA | 2443 | CG5507-RA | 660..1833 | 40..1196 | 5100 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26909473..26910340 | 305..1160 | 3465 | 96 | Plus |
| 3R | 32079331 | 3R | 26883956..26884224 | 40..308 | 1345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7752..7804 | 567..620 | 114 | 70.4 | Plus |
FMO04455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:08 Download gff for
FMO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1795 | 33..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:10 Download gff for
FMO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1795 | 33..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:58 Download gff for
FMO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1795 | 33..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:58 Download gff for
FMO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26883950..26884223 | 33..307 | 99 | -> | Plus |
| 3R | 26909476..26910343 | 308..1165 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:08 Download gff for
FMO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22709672..22709945 | 33..307 | 99 | -> | Plus |
| arm_3R | 22735198..22736065 | 308..1165 | 96 | | Plus |
