FMO04456.5prime Sequence
580 bp (580 high quality bases) assembled on 2008-07-30
> FMO04456.5prime
TTAAACGAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCG
GACTGCTCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGC
GCCGGCAAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCAC
CACGATACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACC
TCAAGTTCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTAT
TGGCGTTGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTC
GGCGGACCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGC
TGCGTGAGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAG
CAGGACATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGG
ACTGGAGAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCA
CCAAGGGCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTG
CAGAGTCGCAAGGCAAGCTTTCTAGACCAT
FMO04456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arl1-RA | 863 | CG6025-RA | 142..682 | 22..562 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15983860..15984181 | 241..562 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 15983377..15983594 | 26..243 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:36 has no hits.
FMO04456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:31 Download gff for
FMO04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl1-RA | 131..682 | 14..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:08 Download gff for
FMO04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf72A-RA | 145..696 | 14..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:32 Download gff for
FMO04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arl1-RA | 131..682 | 14..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:32 Download gff for
FMO04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15983373..15983594 | 18..243 | 98 | -> | Plus |
| 3L | 15983863..15984181 | 244..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:31 Download gff for
FMO04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15976473..15976694 | 18..243 | 98 | -> | Plus |
| arm_3L | 15976963..15977281 | 244..562 | 100 | | Plus |
