FMO04457.5prime Sequence
773 bp (773 high quality bases) assembled on 2008-07-30
> FMO04457.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCCAGTGCACGG
AACCTATTGTTGCTATCCTCGTCGCGTTTGCACGGCCATGGATACTTGGA
GCATGCGCGCGGCCAGCTGGAGGATCTCTTCAAGAGTGCCAATGTGAAGA
CCGTGCTCTTTGTGCCCTACGCTCTGCGGGATCACGACAAGTACACTGCC
ACCGTGCGCGATGCACTGCAGCCGTGGGGATTCAATGTGGAGGGACTGCA
CACGAAGCCGGATCGCGAGCAGGCATTGCGGGAGGCACAGGCCATCTTTG
TGGGCGGCGGCAACACCTTTGTGCTGCTGCGTTCGCTCTACGAGATGAAG
TTGCTCGATCCGATTAGGGAACTGGTGCTCCAGCGTGGATTGCCTTACGT
GGGCAGCAGTGCGGGCACAAATGTGGCAACTCGATCCATTCACACCACCA
ACGACATGCCGGTGGCCTATCCGCCGAGCTTTGAGGCACTCGCCCTCGTT
CCCTTCAACATCAATCCGCACTATCTGGATCCGGAGGCGGGTAGTCGGCA
CAAGGGCGAGACGCGAGACGAGCGGCTGGAGGAGTTCGTCGCATACCATG
GACTGCCCGTGCTGGGTCTTCGCGAGGGCACCAGTGTCCGGGTTCAGGGC
GAGAAGGCCATCCTCCTGGGCGATCGCAATGCCAAGCTGTTCAAGGCTGA
CGGTGGCACCGAGGAGCTAGCACCCCTAGCGGATCTCACCTTCCTGCTGC
AGAAAGCAAGCTTTCTAGACCAT
FMO04457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2200-RB | 1224 | CG2200-RB | 275..994 | 36..755 | 3600 | 100 | Plus |
| CG2200-RA | 1055 | CG2200-RA | 106..825 | 36..755 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13094771..13095333 | 135..697 | 2815 | 100 | Plus |
| X | 23542271 | X | 13094573..13094673 | 36..136 | 505 | 100 | Plus |
| X | 23542271 | X | 13095445..13095502 | 698..755 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:11:00 has no hits.
FMO04457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:10 Download gff for
FMO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2200-RA | 103..828 | 33..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:26 Download gff for
FMO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2200-RA | 57..782 | 33..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:28 Download gff for
FMO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2200-RA | 103..828 | 33..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:28 Download gff for
FMO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13095445..13095505 | 698..759 | 96 | | Plus |
| X | 13094570..13094673 | 33..136 | 99 | -> | Plus |
| X | 13094773..13095333 | 137..697 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:10 Download gff for
FMO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12988603..12988706 | 33..136 | 99 | -> | Plus |
| arm_X | 12988806..12989366 | 137..697 | 100 | -> | Plus |
| arm_X | 12989478..12989538 | 698..759 | 96 | | Plus |
