FMO04458.5prime Sequence
471 bp (471 high quality bases) assembled on 2008-07-30
> FMO04458.5prime
TATAGCATACATTAAACGAAGTTATCAGTCGACATGGATTCAGCCATCTC
ACAGATAATCAATGCCCTGGCTATACTGGCCGACGATAAAAATATCCAGT
TGACCATCAAGGAGGCCGGCAAGGGAGCTGCAATTTGTGCTGGCGCTGCG
CTGATCGGAGGACTACTGCTGGGCCCCCGGGGACTGGCACTGGGCGGGGC
CATCGGTGGTCTCACCGCCTACGGACTTACGGAGGGAAATTTCAAATCTC
TAAGTGAGGTCATTTTGAACGATTTGACGGAGAGTCAGCGTCGAGAACTG
GAGCAGCACGTGATCAGGGCCATATCCGAAGTTAGAAATGTACGCGTTCG
AGATGTCGCAAGACTAATACTAAATAACCGGCATGTGCAAGAGGTTGCAC
TCGAAGCAGTCAAGTCCTATATCACTGATCGTATGGGAATGACCATCGTT
GATGCAAGCTTTCTAGACCAT
FMO04458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-RA | 681 | CG11671-RA | 164..583 | 34..453 | 2085 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8288297..8288515 | 235..453 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 8288039..8288241 | 34..236 | 1000 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:10 has no hits.
FMO04458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:05 Download gff for
FMO04458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 34..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:45 Download gff for
FMO04458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 101..528 | 34..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:56 Download gff for
FMO04458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 34..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:56 Download gff for
FMO04458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8288039..8288240 | 34..235 | 99 | -> | Plus |
| 3R | 8288298..8288523 | 236..462 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:05 Download gff for
FMO04458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4113761..4113962 | 34..235 | 99 | -> | Plus |
| arm_3R | 4114020..4114245 | 236..462 | 98 | | Plus |
