FMO04460.5prime Sequence
521 bp (521 high quality bases) assembled on 2008-07-30
> FMO04460.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCAGGCGTCACA
GTGAAGGATATTGACCAGCACGCGGTTACCAAGGCGGTCGCCGTCTTCTT
GAAGAAGACTGGCAAGTTGAAGGTGCCCGACCAGATGGACATCGTCAAGA
CCGCCAAATTCAAGGAGCTGGCGCCCTACGATCCCGACTGGTTCTATGTG
CGTTGCGCCTCGATCCTGCGCCATCTGTACCACCGCAGTCCCGCTGGAGT
CGGTTCGATCACCAAGATCTACGGCGGACGCAAGCGCAACGGTGTCCACC
CCTCGCACTTCTGCCGCGCCGCCGACGGTGCTGCCCGCAAGGCTCTGCAG
GCCTTGGAGCACGCCCGTTTGGTCGAGAAGCACCCGGACGGTGGTCGCAA
ACTGAGCTCCATTGGACAGCGTGATCTGGACCGTATTGCTAACCAGATCG
TGTTCAAGCAGCGCGATGCCGCCAAGCAGACCGGGCCCATTGTTATTTCC
AAGGCAAGCTTTCTAGACCAT
FMO04460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS19a-RE | 678 | CG4464-RE | 93..560 | 36..503 | 2340 | 100 | Plus |
| RpS19a-RA | 620 | CG4464-RA | 35..502 | 36..503 | 2340 | 100 | Plus |
| RpS19a-RC | 925 | CG4464-RC | 340..807 | 36..503 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16638406..16638802 | 107..503 | 1985 | 100 | Plus |
| X | 23542271 | X | 16638233..16638304 | 36..107 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 23933136..23933246 | 295..185 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:25 has no hits.
FMO04460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:05 Download gff for
FMO04460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19a-RB | 53..527 | 31..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:47 Download gff for
FMO04460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19a-RC | 314..784 | 36..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:08 Download gff for
FMO04460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19a-RC | 340..810 | 36..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:08 Download gff for
FMO04460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16638233..16638303 | 36..106 | 100 | -> | Plus |
| X | 16638406..16638805 | 107..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:05 Download gff for
FMO04460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16532266..16532336 | 36..106 | 100 | -> | Plus |
| arm_X | 16532439..16532838 | 107..507 | 99 | | Plus |
