FMO04461.5prime Sequence
1235 bp (1006 high quality bases) assembled on 2008-07-30
> FMO04461.5prime
TTATACGAAGTTATCAGTCGACATGGATGTGGATAATGGCGAGGGGCAGG
TGCAGGTGCACCTGAAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTG
CCGTACGCCATCGATGGCACCGTCACCACCGTGGAACTAAACACATTCGT
GAACGCACTGTTGCGTCAAAAAGATGGCTCTTCCGACACTGACTTCGACT
TCCTGGTGTTCGATGAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGC
GAGAAAGCCATCAGTTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCG
GTTCCCGGCGCCAGAGCCACAGGATTGCCTGCTGCACGACGACTGGGTGT
CCGCGGTGAAGGCTAGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAAC
ACCCTGAATTTGTGGACCAACAAGGGCAAGCACATTCTCACTATTTCTGG
TCACACGGCGCCCATCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGA
CGGGACGTTTTGTGTCCACATCGCAGGATCAGACCGCCATGCTGTGGCAG
TGGAACGTGGGCTCCAACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCA
CGAGCGAGGCGTCGACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTG
CCACGGGCTCTTGGGACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGAC
GATGCAGTCGAGGGCAGCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAAC
CCCAAAATTACGCTGCAGGGGACATCGTGAGAGCGTATCAGCCGTGCAGT
GGATGGGATGCTACCACTCTGCTAACTGGCAGCTGGGATCACACACTCAA
GGTGTGGGATCTGAGTCTTGAGGGCATCAAGACCGAAATATCCACCAACA
AGTCATATTCGATGCGAGCTACTCAAAGCTGAATCGCTGATACTGACTGC
TTCGGCGGAACAAGATCTGCGGCTCTATGATCCTAGGACAACCAGGGATC
ATGGTAAGGATTACCTATCTGGGAACCAATGCCTGGGTGCAAACGGTCCA
TGGTGGTCCACCACGAAGGATTCTATTTTGTCCTCATGCGCTTTTGACAA
CAGAACAACTTGGGGACGCAAGAGATTCCAAGGCACACATGTACAGATCT
CCTGGGTTACGGGTGAAGTCCTGGACTCGACTGGTCAATTCCAGGTATAC
ATGTTAATACTGGGTGAGGTGTGTTCGGACAAAAC
FMO04461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-RA | 1535 | CG6724-RA | 220..1400 | 23..1197 | 4875 | 95.4 | Plus |
| CG6724-RB | 1529 | CG6724-RB | 220..1394 | 23..1197 | 4795 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10768948..10769613 | 748..83 | 3225 | 98.9 | Minus |
| 2L | 23513712 | 2L | 10768647..10768892 | 991..746 | 965 | 96.4 | Minus |
| 2L | 23513712 | 2L | 10769675..10769733 | 81..23 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:21 has no hits.
FMO04461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:43 Download gff for
FMO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1283 | 15..1085 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:29 Download gff for
FMO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 226..1295 | 15..1085 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:09 Download gff for
FMO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1283 | 15..1085 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:09 Download gff for
FMO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10768644..10768890 | 749..993 | 96 | <- | Minus |
| 2L | 10768948..10769614 | 82..748 | 98 | <- | Minus |
| 2L | 10769675..10769739 | 15..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:43 Download gff for
FMO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10768644..10768890 | 749..993 | 96 | <- | Minus |
| arm_2L | 10768948..10769614 | 82..748 | 98 | <- | Minus |
| arm_2L | 10769675..10769739 | 15..81 | 94 | | Minus |
