FMO04462.5prime Sequence
1046 bp (1046 high quality bases) assembled on 2008-07-30
> FMO04462.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGTGAATC
AAAAATGGAACTGGGACACCAAGCCAATTCTGGTCAAATGCGGAGGATTC
TCCTCGCAATTGGCCAAGAATGTCACCGAAAAAGTGGACGGTGATCCACT
GTGGGGATCGCGATTCGATGCCACCAATCCGGAAGCTGTGATCCAAACAC
ATCTGGACTTTCTCCGCAACGGAGCGGATATTATTCTAACCAACACGTAT
CAGTCCAGCGTCGAGGGATTCGTGAAGTACCTGGGCGTGACCAGAGAACG
AGGTGTGGAGTTGATCCAAAAGAGCGTTCAACTGGCCAAGCAGGCAAAGG
AACAGTACCTTAGCGAAATCGGTTCTGAAGCGGAGTCGGCTCTTCCACTG
ATCATGGGCTCAATAGGTCCATATGGCGCCTATCTCCACGATGGATCTGA
GTACACCGGCAACTATGCGGACAAGATGTCCAAGGAGGAGCTGAGGGCGT
GGCACAAGACAAGAATTGAGATTTGTCTCGCAGCTGGAGTGGATGGATTG
GCCCTGGAAACACTTCCATGTCTGATGGAGGCAGAGGCAGTCACCGAATT
AGTACTGGACAACTTTCCGGATGCCAAATTCTGGGTCTCCCTGCAGTGCA
TGGATGAAAAGCACATGGCTAGTGGAGAAAACTTCGCGGAGGCGGCTCTC
TCCCTCTGGCGGTTGGTCCAAAGTCGGAAGGCTGAAAACCGGCTCCTTGG
GATCGGTCTGAACTGTGTAAACCCACTATTCGTGACCCCTTTGCTATCAT
CGCTTACCAAGTGGCCGGTTCGGATCGCATCCCACTGGTGGTCTACAGCA
ATCGCGGCGAGATCTACGACGTCGAGCAGGAGATTGGACTGGAACCGGCG
AGGAGGTGGTCAAGTTTGTGCCCGAGTGGATCCAGCTGGGAGTGCGCATC
GTTGCGGCTGTTGCCGGGTCTATCCGACGACGTGGTTGGCGATCCGCAAG
TACGTCGATGGCCCTCAACATAAAGCCGGCAGCTTTTTAAAACAAT
FMO04462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10623-RC | 1725 | CG10623-RC | 264..1259 | 35..1028 | 4810 | 99.2 | Plus |
| CG10623-RB | 1494 | CG10623-RB | 33..1028 | 35..1028 | 4810 | 99.2 | Plus |
| CG10623-RA | 1583 | CG10623-RA | 122..1117 | 35..1028 | 4810 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18956430..18957048 | 653..35 | 3080 | 99.8 | Minus |
| 2L | 23513712 | 2L | 18955947..18956325 | 1028..652 | 1610 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:53 has no hits.
FMO04462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:22 Download gff for
FMO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10623-RA | 122..1117 | 35..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:09 Download gff for
FMO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10623-RA | 116..1111 | 35..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:21 Download gff for
FMO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10623-RA | 122..1117 | 35..1028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:21 Download gff for
FMO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18955948..18956324 | 653..1027 | 98 | <- | Minus |
| 2L | 18956431..18957048 | 35..652 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:22 Download gff for
FMO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18955948..18956324 | 653..1027 | 98 | <- | Minus |
| arm_2L | 18956431..18957048 | 35..652 | 99 | | Minus |
