FMO04466.5prime Sequence
1227 bp (1032 high quality bases) assembled on 2008-07-30
> FMO04466.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGATACCGCTGTCGC
ACAAGGACCGGAGCAGTCTGGGCTACCGGATCCGGGAGAAGCTCAACAGC
TGGAAACGACTCATCTTCTCCGACCGCAACTCCCGGAATCTGTTCCTCTT
TCTGCTGCTCAACCTGAGCTTCGCCTTCGTGGAGCTCTTCTACGGCATTG
TGACGAACAGTTTGGGCCTGATCTCCGACTCATTCCACATGTTCTTCGAC
TGCACTGGCCTCTTGGCGGGACTGGCCGCGTCGGTTATCACCAAGTGGAA
GGCCAACGACAAGTTCTCCTACGGCTATGTGCGCGCCGAGGTGCTGGCCG
GCTTCGTGAATAGCCTGTTCCTGTTGTTCATAGCCTTCTTCATTCTGTCG
GAGGGCGTGGAGCGACTTATCGAACCGCCGGAGGTCAAGCACGAGCGTCT
GTTTGTCGTCTCCGTGCTGGGACTGCTGGTGAACCTGGTGGGCATCTATG
CCTTCAATCACGGCGGACATGGACACTCGCACGGTGGACACGGACACTCC
CACGGTGGTGGTCATGGGCACGGGCACTCGCACGGCCACACGGACGCCGG
CAATCACAATCACCAAGCCATCACCTTGGACAATGGCCATGGACACTCAC
ACGATCACGACAGCCATGGCCACTCGCACGGCGACATGTCGGGCAGCAAC
TCGCAGATCATGCGCGGCGTCTTCCTGCACATCCTGGCGGACACTTTGGG
TTCGGTGGGCGTGATCATCTCGGCGGTGCTGATGCACATGTTCGGCTGGA
TGATAGCGGACCCCATTTGCTCCATCTTCATAGCCTTGCTGATAGCGCTC
AGTGTGCTGAGTCTGATCAAGGAGTCGATCATGATCCTGATGCAGCGACA
ACCCGCCGACCTGGACCGATCGCTGCCGCAGTGCTATCAGAAAGTCACGG
GCCTGGCTGGCGTTTACGCTGTGCAGGAGCCGCACTTCTGGACTCTTTGC
TCGATGTCTATGTGGGCGCACTCAAGCTGGAGGTGTCAGACGTCGATCCA
AGTACGTGGTGACGCACACCCGATGATTCTTTGGAGGCGGGTGGGCGTCA
AGCGATCTACATACAGTTTGATTAGTTGCAAGCCTTCCAGAACATTCGTT
GGCGCGCGGCCAGTATGCTAATCTAGTCTATCTAATCTATTCCACCTAGC
TAAGGGAATCCTGGTCTATAGACATAC
FMO04466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT86D-RA | 2003 | CG6672-RA | 343..1436 | 35..1124 | 5185 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11213456..11213877 | 636..215 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 11212875..11213368 | 1124..635 | 1985 | 96.2 | Minus |
| 3R | 32079331 | 3R | 11213947..11214128 | 216..35 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:59 has no hits.
FMO04466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:02 Download gff for
FMO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6672-RA | 343..1447 | 35..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:32 Download gff for
FMO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6672-RA | 321..1425 | 35..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:04 Download gff for
FMO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT86D-RA | 343..1447 | 35..1134 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:04 Download gff for
FMO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11212864..11213367 | 636..1134 | 96 | <- | Minus |
| 3R | 11213457..11213876 | 216..635 | 100 | <- | Minus |
| 3R | 11213948..11214144 | 25..215 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:02 Download gff for
FMO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7038586..7039089 | 636..1134 | 96 | <- | Minus |
| arm_3R | 7039179..7039598 | 216..635 | 100 | <- | Minus |
| arm_3R | 7039670..7039866 | 25..215 | 95 | <- | Minus |
