FMO04467.5prime Sequence
801 bp (801 high quality bases) assembled on 2008-07-30
> FMO04467.5prime
TATAGCATACATAAAACGAAGTTATCAGTCGACATGGCGGAGGCAGCATC
CTGTGCCCGAAAGGGGACCAAGTACGCCGAGGGCACCCAGCCCTTCACCG
TCCTCATCGAGGGCAACATCGGCAGCGGGAAGACCACGTATTTGAACCAC
TTCGAGAAGTACAAGAACGACATTTGCCTGCTGACCGAGCCCGTCGAGAA
GTGGCGCAACGTCAACGGGGTAAATCTGCTGGAGCTGATGTACAAAGATC
CCAAGAAGTGGGCCATGCCCTTTCAGAGTTATGTCACGCTGACCATGCTG
CAGTCGCACACCGCCCCAACCAACAAGAAGCTAAAAATAATGGAGCGCTC
CATTTTTAGCGCTCGCTATTGCTTCGTGGAGAACATGCGACGAAACGGCT
CGCTGGAGCAGGGCATGTACAATACGCTGGAGGAGTGGTACAAGTTCATC
GAAGAGTCCATTCACGTGCAGGCGGACCTCATCATATATCTGCGCACCTC
GCCGGAGGTGGCGTACGAACGCATCCGGCAGCGGGCTCGTTCTGAGGAGA
GCTGCGTGCCGCTTAAGTACCTTCAGGAGCTGCATGAGTTGCACGAGGAC
TGGTTGATACACCAGAGACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGA
TGCCGATCTGAACCTGGAAAACATTGGCACCGAGTACCAGCGCTCGGAGA
GCAGCATATTCGACGCCATCTCAAGTAACCAACAGCCCTCGCCGGTTCTG
GTGTCGCCCAGCAAGCGCCAGAGGGTCGCCAGAGCAAGCTTTCTAGACCA
T
FMO04467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnk-RB | 1265 | CG5452-RB | 221..970 | 34..783 | 3750 | 100 | Plus |
| dnk-RA | 1123 | CG5452-RA | 149..898 | 34..783 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18981572..18981903 | 34..365 | 1660 | 100 | Plus |
| 3R | 32079331 | 3R | 18981979..18982252 | 365..638 | 1370 | 100 | Plus |
| 3R | 32079331 | 3R | 18982306..18982454 | 635..783 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:49 has no hits.
FMO04467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:32 Download gff for
FMO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnk-RA | 149..906 | 34..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:33 Download gff for
FMO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnk-RA | 172..929 | 34..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:08 Download gff for
FMO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnk-RA | 149..906 | 34..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:08 Download gff for
FMO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18981572..18981903 | 34..365 | 100 | -> | Plus |
| 3R | 18981980..18982250 | 366..636 | 100 | -> | Plus |
| 3R | 18982308..18982462 | 637..792 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:32 Download gff for
FMO04467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14807294..14807625 | 34..365 | 100 | -> | Plus |
| arm_3R | 14807702..14807972 | 366..636 | 100 | -> | Plus |
| arm_3R | 14808030..14808184 | 637..792 | 97 | | Plus |
