FMO04469.5prime Sequence
1135 bp (1016 high quality bases) assembled on 2008-07-30
> FMO04469.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGGCGTTCATTTCGAA
AGACTTTCGGTCGCCGGGGGAAACTTGGATCAAAACCGATGGCGGCTGGG
AGCGTTCCAAGGTGCTCGAGTGCGGCGGAAAGCGGAAGCGGCACCATTCA
GAGGGCAGCAGCAGCTACCAGGACAGCGACAGTTCGGAGGAGGAGGCGGT
GATGCCGCCGCATTATCACATCACCATCCGGTGTACCAGAGAGATAGCCG
GGTTTAATGGTCTCAGTGAGGCTGTGAAGCGTCTGGATTTCAGGCGATCT
GTGCGGGATCGCAAGCGGTTCCACTACATATGCGCCTTCCTGCTGCTCGT
GTCCAACAAGGGTATTGCCAGTCTGCCAGGCAGTGCTCAGCGCCAGCTAC
TCCAAATGGTCGAGGAGGTGGCCTCGCATGTAAATGACAGCCAGCAGCAT
CCGAATGTGCTGCGCGGCCTGGCCCTGAAGCTGGAGCACATTGTCAGCCA
AGAGAACCAGAAGTGCTGGGGCAAGCCGCTGGGCAGCACGTACCTGTGGA
AGGAGCACATGGCCACCATCAAGCGCATCCAGCGCGTGGCCAGCCAGATC
GAAATCCGCGAGCCCGATCCGGAGGCCAAGCCAAAGCTGCACGAACTGCC
GGAGGAGTGTGTGCGGGAGATCATCCTGTGCATAGCCGACCATCGGGACC
TGGAGTCGGCCGCCGAGGCCTGGGAGACCATGGCCAAGCTGGTATCCGAG
CAGCGCATCTGGCGCGAACTGACACGCTTTCACTTCAACCAGCGCCAGAT
CCACACCATTCTGGACCTGGACAAGTTTAAGCAGATGGGCGAGATCAAAG
ACTGGAAGCAGATCTATCATCAACTACGACGCACCTATGGCGTCAACGAT
GATTACCAGTTCGCCGAGGTGCTGGCCCTGTGCCGCTCCTGCTGCTGCCT
GTCTGGCGTCGGATGGACACCCGTGCATCGTCGATCAGAGTCCGACTACA
AGCAGCGGCTGAGGAAGCCGTGGTCAGTGGCTCTGGCCACCAGTTCCGCC
CCGCCCAGTTTCTTAGTACTTTCTCGTGGCAAGCTTCTAGAACAATCGAT
GGCGCGCGGTCAGGTAAGTGGTCATATCTAATCCT
FMO04469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 2056 | CG11658-RE | 395..1452 | 34..1084 | 4975 | 98.6 | Plus |
| CG11658-RD | 2068 | CG11658-RD | 407..1464 | 34..1084 | 4975 | 98.6 | Plus |
| CG11658-RC | 2563 | CG11658-RC | 307..1364 | 34..1084 | 4975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11700714..11701175 | 1065..611 | 1870 | 97.6 | Minus |
| 3L | 28110227 | 3L | 11701482..11701772 | 430..140 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 11701238..11701420 | 612..430 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 11707304..11707411 | 141..34 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:31 has no hits.
FMO04469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:23 Download gff for
FMO04469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1364 | 34..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:52 Download gff for
FMO04469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 317..1374 | 34..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:44 Download gff for
FMO04469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1364 | 34..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:44 Download gff for
FMO04469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11700695..11701173 | 613..1084 | 96 | <- | Minus |
| 3L | 11701238..11701419 | 431..612 | 100 | <- | Minus |
| 3L | 11701482..11701771 | 141..430 | 100 | <- | Minus |
| 3L | 11707305..11707411 | 34..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:23 Download gff for
FMO04469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11693795..11694273 | 613..1084 | 96 | <- | Minus |
| arm_3L | 11694338..11694519 | 431..612 | 100 | <- | Minus |
| arm_3L | 11694582..11694871 | 141..430 | 100 | <- | Minus |
| arm_3L | 11700405..11700511 | 34..140 | 100 | | Minus |
