Clone FMO04472 Report

Search the DGRC for FMO04472

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5039-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04472.5prime Sequence

378 bp (378 high quality bases) assembled on 2008-07-30

> FMO04472.5prime
ATACATTATACGAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGAC
GACCATTAGTCCTGAACCGGACATACTGCATCCGGACGACGGTCAATACA
TATGGCTGCCAATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTG
GTCTACGCCATGTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAA
GAGCAGGAAGGCTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATT
CCGATGTGCCCATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACT
GCTACTCTCCTCACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGC
CTCCAATGCCGCAAGCTTTCTAGACCAT

FMO04472.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-RA 719 CG5039-RA 95..427 28..360 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25678968..25679159 146..337 945 99.5 Plus
3R 32079331 3R 25678777..25678901 28..152 625 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:03:36 has no hits.

FMO04472.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:34 Download gff for FMO04472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..427 28..360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:47:41 Download gff for FMO04472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 66..398 28..360 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:43 Download gff for FMO04472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..427 28..360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:43 Download gff for FMO04472.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25678777..25678899 28..150 100 -> Plus
3R 25678973..25679158 151..336 100 -> Plus
3R 25679214..25679237 337..360 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:34 Download gff for FMO04472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21504499..21504621 28..150 100 -> Plus
arm_3R 21504695..21504880 151..336 100 -> Plus
arm_3R 21504936..21504959 337..360 100   Plus