FMO04473.5prime Sequence
1206 bp (1002 high quality bases) assembled on 2008-07-30
> FMO04473.5prime
ATTATACGAAGTTATCAGTCGACATGTCCGAGATCAAGGCGTTGGAGCAC
GCCACCCTAAAAGTGCCATACGAGATGCTGAACAAGCGCTTCCGTTCGGC
ACAGAAGATCATCGACAGGGAGGTGGACCAGGTGATCAATGTATCGCGTC
AGGTGGAAAAGGCCCTAGAAGCAGAGGAGGGTCCCATTCTGGCCGAGGTC
ACCAAGCTGGTGGATAACGTAGCGCAGAAATTGCAGGTGCTCAAGCGCAA
GGCCGAGGAGAGCATCAATGATGAGCTGAGCGTCACACAGATCTGCAAGC
GCAAGCTGGACCACCTAAAGGGCATTACACCGCCAAGCAGCGTTACAGGC
GACCTGTGGCAGGGTTCCGTGGACCAATGGAAGCGGATCCGACTAGACCG
CCTGGTCATCGAGCACCTGCTGCGCATGGGATACTATGAAACGGCCGAGG
AGCTGGCCGCCAAGTCCGATGTGCGCCACCTGACCAACCTGGACATTTTT
CAGACGTCGCGCGAGGTCGAGGATGACTTGGCCAGTCACAGCACCACCAA
ATGCGTGCTTTGGTGCATAGACAATAAGTCTAAGCTCCGCAAGATCAACT
CGACCATTGAATTCAGCCTGAGGGTGCAAGAGTTCATCGAGCTCGTGCGT
CAAAATCAGCGTTTTGAGGCTGTGAAGCATTCGCGTCGCTACTTCCCCGC
ATACGAGAAGACTCAGCTGAATGAGATCTGCCACGTGATGGCCCTGCTGG
CCTATCCGGCCGATGCCCAAGCCGAGCACTACCGCAAGTACATGGATCCG
CAGCGGTGGCAAAAGTTGGTGTTGGACTTCCGTCAAGAGAACTACCGCCT
CTTCCAGCTATCCAGCACGTCCGTCTTCTCGGCAGCCGTGCAGGCCGGTC
TGTCGGCCCTGAAGACGCCCACTGCTATGCTCAGACCTGCCGTAACCTTA
CTGCCCGTGTGTCAGAAGATCTCAACCGCATCGCTCCCAGTTGCCATACT
CGCACTTGGTGTGCCAGAGCCGTCTTTATATGCCCGGGTTCCAAGGGCTG
CGCTCACGAGCACATCAGCGATGATGCTGCCCACGAACGATCTTGTCGAT
GGCTCTGCGGAACTCACCAGACGACGTTACCGTCACTGTCCGTAACATCG
AGTTCCAACCAAGGTCGAAGTCTTTGTGTATGCAAGCCTTTTAGAGACCC
AAATCC
FMO04473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-RA | 1681 | CG31357-RA | 106..1236 | 24..1142 | 4995 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24828867..24829854 | 1006..24 | 4660 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:40 has no hits.
FMO04473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:37 Download gff for
FMO04473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..1181 | 24..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:35 Download gff for
FMO04473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 70..1145 | 24..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:21 Download gff for
FMO04473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..1181 | 24..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:21 Download gff for
FMO04473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24828779..24829854 | 24..1094 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:37 Download gff for
FMO04473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20654501..20655576 | 24..1094 | 97 | <- | Minus |
