FMO04474.5prime Sequence
883 bp (883 high quality bases) assembled on 2008-07-30
> FMO04474.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAACTCTG
GAGAGGATTTTCAGGTGGTAACGCGCAAGAAATGGATGGCTCGTAAGTGC
CTGAGGCGGCGGGATCGCCATAAATCCGAAAGCGATTACCTAATCGACTG
TCCGGATGTGAATGTGGAGAAATTTCAGCCGCGCCTTGAGAACCTGTGCA
CCGAGATGTGCCAAAGCGACTACTTTCTGGTGGCCATGGAAGCGCTGCAG
CAGCAACTGGAGGGCATTAGGAAACCGTTGGAGCGAATTGTTTGCCTGGG
ACTGGGACCTTTCTCCCGCACCTACCATGCCCTGCATCAGGCTGCATTTG
TGATTGGACTGCATCGGCATCACAAGATCAGAGAGGCCTTGTACTTCGAT
CCCGTCTTCAGAGACAGCGAGAAGGAACTGATCCGGCTGTTCGACGGTTG
TATAATGAGCAAAGACTGCGCGGGCAAGCACGAGGCGACGGTGCCCACGC
TCTATTATCTGCCACACTGCCCCTACGCTCTGATGCATAACATCCTGTGG
TCCAATTGGAAGCGGGAGACACTGCCCAACGTTTTTCTCATCTCGAATAG
CTTCGAAATGCTGACCATGACGCCCAGAAACCAGGATGACCACATAACAA
GAATAGTAGAACATTGTACAGAAACTCCGCTGGAAGATGACTACGAGCAC
CACAATGTATTCAACGACTTGTCGCTGCACACGTTCCCCCAGGAATCCTT
GCCCGGTAGCAACGACGAAGCGTTCTGGACACGATGTGCTCCCTTGAAGG
TAAACGAGGATGAACTGATCACGGAAACGGAGACGAGCCTTGCTGCCCTG
AAGCTTGAATCTGAAGCAAGCTTTCTAGACCAT
FMO04474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7988-RA | 885 | CG7988-RA | 33..860 | 38..865 | 4140 | 100 | Plus |
| CG7183-RA | 2367 | CG7183-RA | 1..142 | 179..38 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18220764..18221448 | 181..865 | 3425 | 100 | Plus |
| 3R | 32079331 | 3R | 18220558..18220701 | 38..181 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:24 has no hits.
FMO04474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:00 Download gff for
FMO04474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7988-RA | 31..863 | 35..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:53 Download gff for
FMO04474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7988-RA | 31..863 | 35..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:43 Download gff for
FMO04474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7988-RA | 31..863 | 35..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:43 Download gff for
FMO04474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18220556..18220700 | 35..180 | 99 | -> | Plus |
| 3R | 18220764..18221447 | 181..864 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:00 Download gff for
FMO04474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14046278..14046422 | 35..180 | 99 | -> | Plus |
| arm_3R | 14046486..14047169 | 181..864 | 100 | -> | Plus |
