FMO04476.5prime Sequence
624 bp (624 high quality bases) assembled on 2008-07-30
> FMO04476.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAAACCCGAACGTAA
TGTGATGATAGCGGCCACCGGAAGTGTGGCCACCATTAAGTTAGCCCAGT
TAATCCGAGAGCTCTCCGACGAGCGCCTACCCTTTAAGTTCCACCTGAAA
GTACTTATTACCGAAGCAGCCAAACACTTCTTTGAACTGGAGCAGATTCC
CGAAAATGTACCCATTTACCACAATCGCGACGAGTGGATCACCTGGAACA
AGCGAGGAGATCCTGTACTCCACATAGATCTAGGCAAGTGGGCGGATTTG
TTGGTAATAGCCCCACTCAGCGCAAACTCTCTGTCCAAAATGGCCACCGG
GATTTGCGATAATATCGTCATGTGTGTGGTGCGGGCCTGGGACCTTGAGA
AGCCGCTGCTCTTTGCACCTGCGATGAATACCCGTATGTACGACCATCCA
ATAACTCGGGAGCAGATCGACAAGCTGACCAGTTGGGGCTACAAGGAGAT
ACCCTGCATATCCAAGACTCTGATGTGCGGTGATACTGGCAACGGCGCCA
TGGCGGAGGTACCCACAATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCG
ATTAAAGCAAGCTTTCTAGACCAT
FMO04476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42496-RB | 1117 | CG42496-RB | 469..1042 | 33..606 | 2870 | 100 | Plus |
| CG42496-RA | 1064 | CG42496-RA | 416..989 | 33..606 | 2870 | 100 | Plus |
| Ppcdc-RB | 1117 | CG30290-RB | 469..1042 | 33..606 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21692432..21692689 | 349..606 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 21691995..21692170 | 33..208 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 21692234..21692375 | 208..349 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:55:25 has no hits.
FMO04476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:13 Download gff for
FMO04476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcdc-RB | 466..1047 | 27..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:38 Download gff for
FMO04476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30290-RA | 403..984 | 27..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:29 Download gff for
FMO04476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppcdc-RB | 466..1047 | 27..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:29 Download gff for
FMO04476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21691992..21692170 | 27..208 | 98 | -> | Plus |
| 2R | 21692235..21692374 | 209..348 | 100 | -> | Plus |
| 2R | 21692432..21692694 | 349..614 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:13 Download gff for
FMO04476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17579497..17579675 | 27..208 | 98 | -> | Plus |
| arm_2R | 17579740..17579879 | 209..348 | 100 | -> | Plus |
| arm_2R | 17579937..17580199 | 349..614 | 98 | | Plus |
