FMO04478.5prime Sequence
947 bp (947 high quality bases) assembled on 2008-07-30
> FMO04478.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCCTACCGCCAAG
ACCAACAAGGGTGATACCAAGACCGCTGCCGCTAAGCCAGCGGAGAAGAA
GGCCGCTCCCGCAGCCGCCGCCGCCAAGGGCAAGGTGGAGAAGCCGAAGG
CTGAGGCCGCCAAGCCCGCCGCCGCCGCGGCCAAGAACGTGAAGAAGGCG
TCCGAGGCGGCCAAGGATGTAAAGGCAGCCGCCGCTGCTGCCAAGCCCGC
GGCAGCCAAGCCCGCAGCTGCCAAGCCCGCCGCCGCTTCCAAGGATGCCG
GAAAGAAGGCTCCCGCTGCCGCTGCTCCCAAGAAGGACGCCAAGGCTGCT
GCTGCTCCGGCTCCCGCCAAGGCTGCTCCGGCCAAGAAGGCTGCCTCCAC
GCCTGCTGCCGCTCCCCCAGCAAAGAAGGCTGCTCCCGCCAAGGCCGCAG
CCCCGGCTGCTGCTGCTCCCGCTCCGGCTGCAGCTGCTCCTGCTGTCGCC
AAGCCCGCGCCTAAGCCGAAGGCAAAGGCTGCCCCAGCTCCCAGCAAGGT
GGTCAAGAAGAACGTGCTGCGTGGCAAGGGACAGAAGAAGAAGAAGGTCT
CGCTGCGCTTCACTATCGACTGCACCAACATTGCTGAGGATAGCATCATG
GATGTGGCCGACTTCGAGAAGTACATCAAGGCCCGCCTTAAGGTCAACGG
CAAGGTGAACAACCTGGGCAACAACGTCACCTTCGAGCGCTCCAAGCTGA
AGCTCATTGTCAGCTCCGACGTTCACTTTTCCAAGGCATACCTCAAGTAC
TTGACCAAGAAGTACCTGAAGAAGAACAGTCTGCGCGACTGGATCCGTGT
GGTGGCCAACGAAAAGGACTCGTACGAGCTGCGCTACTTCAGAATCAGCT
CCAACGACGATGAGGACGACGATGCCGAGGGAAGCTTTCTAGACAAT
FMO04478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..932 | 33..929 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 666..45 | 3110 | 100 | Minus |
| X | 23542271 | X | 762728..762991 | 929..666 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:04 has no hits.
FMO04478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:07 Download gff for
FMO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..937 | 33..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:41 Download gff for
FMO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 45..946 | 33..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:07 Download gff for
FMO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..937 | 33..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:07 Download gff for
FMO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762723..762991 | 666..934 | 99 | <- | Minus |
| X | 764302..764922 | 45..665 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:07 Download gff for
FMO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656756..657024 | 666..934 | 99 | <- | Minus |
| arm_X | 658335..658955 | 45..665 | 100 | <- | Minus |
