FMO04479.5prime Sequence
1227 bp (1054 high quality bases) assembled on 2008-07-30
> FMO04479.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGAGGGAAATCGTT
CACATCCAAGCTGGTCAGTGCGGCAACCAAATCGGCGCCAAGTTCTGGGA
GATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACGGTG
ACAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCGTCC
GGTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGGCAC
CATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCGACA
ACTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCAT
TACACAGAGGGTGCTGAGCTGGTGGACTCAGTGCTCGATGTTGTCCGCAA
GGAGGCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACACTCCC
TTGGCGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTTCCAAGATC
CGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTTGTGCCGTC
GCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCACCCTGTCGG
TGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCGACAACGAG
GCTCTCTACGATATCTGCTTCCGCACCCTCAAGCTGACGACACCCACATA
CGGTGACCTGAACCATCTTGTCTCCCTGACCATGTCCGGCGTAACCACCT
GCCTCCGATTCCCCGGCCAACTGAACGCTGATCTCCGCAAGCTGGCCGTC
AACATGGTGCCCTTCCCACGTCTTCACTTCTTCATGCCCGGCTTCGCTCC
CCTGACCTCCCGAGGATCCCAGCAGTACCGCGCCCTCACCGTGCCCGAGC
TGACCCAGCAGATGTTCGATGCCAAGACATGATGGCCGCCTGCGACCACG
CCACGGACGCTACCTTACCGTCGCCGCCATCTTCGTGGACGCATGTCATG
AAGAGTCGACGAGCAGATGCTGACATCCAGAACAGACAGCTCCTACTTCG
TCGAATGGAATCCCCACACGTGAGACGGCGTGGTGCGACATTCCCGCCCC
GTGATTGAAAATGTCCGCCCACCTTCATCGCAATCCATTGCCATCCAGGA
CTGTTCAAGGCATCTCCGAACGTCACGTATGTCAGGCTAGCATCTTGCAC
TGGTCACCCGCGCAAGGTCTAGTAGAT
FMO04479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RB | 1596 | CG9277-RB | 112..1259 | 36..1169 | 5150 | 97.7 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1364 | 93..1169 | 4865 | 97.6 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 202..1364 | 36..1169 | 2640 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447771..19448748 | 1059..91 | 4480 | 98.9 | Minus |
| 2R | 25286936 | 2R | 24311194..24311751 | 429..984 | 1700 | 87.8 | Plus |
| 3R | 32079331 | 3R | 9409029..9409600 | 997..429 | 1510 | 85.5 | Minus |
| 3R | 32079331 | 3R | 9409679..9410046 | 409..42 | 805 | 81.2 | Minus |
| 3R | 32079331 | 3R | 27968931..27969185 | 984..732 | 710 | 87.1 | Minus |
| 3R | 32079331 | 3R | 27972919..27973151 | 559..327 | 565 | 82.8 | Minus |
| 2R | 25286936 | 2R | 24310905..24311136 | 196..427 | 545 | 82.3 | Plus |
| 3R | 32079331 | 3R | 27969656..27969829 | 729..556 | 465 | 84.5 | Minus |
| 3R | 32079331 | 3R | 27974107..27974344 | 328..91 | 365 | 76.9 | Minus |
| 2R | 25286936 | 2R | 19451433..19451489 | 92..36 | 285 | 100 | Minus |
| 2R | 25286936 | 2R | 24310720..24310832 | 91..203 | 220 | 79.6 | Plus |
| 3R | 32079331 | 3R | 27969439..27969535 | 669..573 | 215 | 81.4 | Minus |
| 3L | 28110227 | 3L | 6531600..6531723 | 724..847 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:31 has no hits.
FMO04479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:18 Download gff for
FMO04479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 112..1268 | 36..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:52 Download gff for
FMO04479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 129..1285 | 36..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:17 Download gff for
FMO04479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RB | 112..1268 | 36..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:17 Download gff for
FMO04479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19447647..19448746 | 93..1176 | 97 | <- | Minus |
| 2R | 19451433..19451489 | 36..92 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:18 Download gff for
FMO04479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15335152..15336251 | 93..1176 | 97 | <- | Minus |
| arm_2R | 15338938..15338994 | 36..92 | 100 | -> | Minus |
