FMO04480.5prime Sequence
1231 bp (952 high quality bases) assembled on 2008-07-30
> FMO04480.5prime
ATAGGAAGTTATCAGTCGACATGCTTGTGAAGTCATTCAGATCGGCCCTG
GTTGCCTGCCTGATCACCCTTGTGCCTTGCGGAAGTGCTCAAGCATTCCT
CGCGAAGCCGACATCTCCGCAGGGATATCAGGATGTCAACGGCGTGTGGC
AAAGCTCTTTCGTTTGTCAAACAGGATATCAATTGAAAGCGGATGGAAAA
TGTTATCCACAGACTAACAAAACGTGCGGGCCTGGATACTTTCTTAGCAT
TGATGAACTATGCTATCGTACGAATCCTGAGCCTTGCCCGCTTGAATCGA
CGACCACTACTACTACGACAACAACAACAACAACAACAGAGCCCACTACC
ACAACAACAACGGCAGAGCCCACTACCACAACAACAACAACAGAGCCCAC
TACCACAACAACAACAACAGAGCCCACTACCACAACAACAACAACAGAGC
CCACTACCACAACAACAACAACAACAACTGCGCCTCCCGTCATTACAGAA
CTGACTCGCTGTCCACCGGGATCGATTTACTTCGACTCGCAGTGCAGGAA
AATCGTCTGTTCGGAGGGTGAATATAAGGCTGGCCGTTGCATTTCATTGG
CATGCCCAGCGGGAACCGTGTGGTATCAAAAACGCTGCCAACAACCGGGA
TTTATCACCACTATCCTTGAGATTGACAATGTGATCCACAATGAGCACAA
GTACTCGGTGACCAGCGAAAAATATAAATCGTGTGGAGTACATTACATCC
GCACCCTATGATCCCGATAAACGACAAGAGCTATGACTATACTATAGATA
ACATCGTAGCCACAACAACAACCAGACGTCCCTGGATATACCCCAGTTTG
AGGCCATCTACGGACAGTCGGCGGCTAATGAAGTCTTTCCGGGGCGTCAT
CCTCCCACCGCAATGCTGTTTTGTAAAGAAGCCCCTCGCATCTGCATCAA
CTATGCCGCCTAACTGGGGTGGTGCTCCACAAGGAGAAATTAAGTTCCTG
GCGAATTCCAGAAGCTCCGGCACGGGCCCGGGTGGTTATACCTCAAGGCC
ACCGAAAGGTCCGTATATTGAACGAAAACCGAACGAAGTGGTCAATGCCG
CCAAATCCTCCACTTCTTGGGCGGCAACAGGCCGAATGCAGGAAAGCGCA
CAATTGGGAATGTTCCGTGCATGACACCACGCGGATAAGTGCTCTCCGAG
GCTGTCTATACAGAGTACCACAACGGTTCGA
FMO04480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6912-RA | 1428 | CG6912-RA | 80..1245 | 21..1204 | 4725 | 95.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15135675..15136393 | 956..234 | 3340 | 99 | Minus |
| 3R | 32079331 | 3R | 15136842..15136925 | 104..21 | 390 | 97.6 | Minus |
| 3R | 32079331 | 3R | 15136709..15136780 | 175..104 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 15136471..15136533 | 235..173 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:07 has no hits.
FMO04480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:40 Download gff for
FMO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 52..1029 | 13..1004 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:55 Download gff for
FMO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 52..1029 | 13..1004 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:24 Download gff for
FMO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6912-RA | 76..1053 | 13..1004 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:24 Download gff for
FMO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15135633..15136392 | 235..1004 | 98 | <- | Minus |
| 3R | 15136472..15136531 | 175..234 | 100 | <- | Minus |
| 3R | 15136710..15136779 | 105..174 | 100 | <- | Minus |
| 3R | 15136842..15136929 | 13..104 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:40 Download gff for
FMO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10961355..10962114 | 235..1004 | 98 | <- | Minus |
| arm_3R | 10962194..10962253 | 175..234 | 100 | <- | Minus |
| arm_3R | 10962432..10962501 | 105..174 | 100 | <- | Minus |
| arm_3R | 10962564..10962651 | 13..104 | 93 | | Minus |
