FMO04481.5prime Sequence
1199 bp (1056 high quality bases) assembled on 2008-07-30
> FMO04481.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGTGCGTAATTCTTT
TATTGTAGAACTTGTCGATGGACATCGTAAGCTGCGGCATCTCTTTCTTT
TTAATGATGTCATCGCATGTGCCAAATACAAAGCATTAGGCCGCGATCGT
ATCGACTATGAGCTCAAATGGTTCATTCCGCTAAAAGACGTATCCATTTA
CGAGGAAGCAGATCCGGCGGTCGAGCTTAAGGAATCTAGTCCAGCAAACA
TTTCGCAAGTAAAACGCAATTTGCGATCCGTTCGAGATCAATTGGCCATG
GAGGTGGCTAACAGTGGAAGTGGAGCCTTCCGTTCCGGTGATAAGTATCG
CCGCAAGCTGGCGGATCTGGAATCACAGCTGGTGCTGGCAACGCCCAATT
TAGTGTTGCGCCTGGGGAACAAGGCAAATAATAAAACCATAACCTTCTTT
CTTAGCTCGGATTTTGAGAGGACGCAGTGGATCGACTCAATCTTATCCCT
TAAGCAAAAATGCAACCTGCCTGGAGCAAATACTATTAATTCCCTGGAGG
TTACCGCCTTCATTGTAGCCATGCAGAAGGGCATGAAAACCGAAATGGGT
TCATATCTTATGCGTAACACTAACGACGAGAGCCTGTTGGTTGGGGACCT
GTACATGGGAGTTCATGGATTGGAAGGACTGGAGCAAGCGAACGACCTGT
ACATCTGCGTCGAGGTGGACTCCTATGGCCACTATTTTCGCAAGGCCACC
ACCAAGAAGATATGTCGCAGTCAAACGCCGCTCTGGAACGAAAGCTTTAT
GCTGGAACTGGAGGGCAGCCAGAATGTACGCATTCTTCTTTATGAGGCTA
AGGAGCGACCGCTTCTTAAAGCCAAGCACATACTTAAGTTGAGTTTAAGT
TGGCTGACAGAAACAACGCAGCCGAGTCAATTAAACTTACTGAGACCTTA
GAGCTCGGCTGTAGCTTCCGTTTTATACCAGGCGAGCTCTCCGCGCCAGC
ACAAAGCCAGAGCCTCTTCGTGCAAATGGAGTCAGTATTAAAACGTGAAA
ACGCGACATCGTTCCATCATAGCGCTGCATTCAGAGTAGCGCTGATGCTG
AGTGGCCTGCTACGGCTCACGTTCCGCTCTGATTGCACTGAATGCCTTGA
TCTGATGCCTATGAGCGGAACATTGTCTCGCGAGAGGTTGACAATCTAA
FMO04481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RB | 5012 | CG00000-RB | 2920..3980 | 33..1082 | 4950 | 98.5 | Plus |
| RhoGAP1A-RA | 5082 | CG00000-RA | 2920..3980 | 33..1082 | 4950 | 98.5 | Plus |
| RhoGAP1A-RE | 5089 | CG40494-RE | 2927..3987 | 33..1082 | 4950 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 137789..138260 | 33..504 | 2360 | 100 | Plus |
| X | 23542271 | X | 138320..138705 | 503..888 | 1930 | 100 | Plus |
| X | 23542271 | X | 138768..138893 | 887..1010 | 515 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:59:33 has no hits.
FMO04481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:19 Download gff for
FMO04481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 2913..3952 | 17..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:15 Download gff for
FMO04481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RB | 2868..3907 | 17..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:10 Download gff for
FMO04481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RE | 2913..3952 | 17..1051 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:10 Download gff for
FMO04481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 137775..138260 | 17..504 | 98 | -> | Plus |
| X | 138322..138705 | 505..888 | 100 | -> | Plus |
| X | 138770..138930 | 889..1042 | 93 | -> | Plus |
| X | 139067..139084 | 1043..1059 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:19 Download gff for
FMO04481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 34162..34647 | 17..504 | 98 | -> | Plus |
| arm_X | 34709..35092 | 505..888 | 100 | -> | Plus |
| arm_X | 35157..35317 | 889..1042 | 93 | -> | Plus |
| arm_X | 35454..35471 | 1043..1059 | 94 | == | Plus |
