FMO04482.5prime Sequence
581 bp (581 high quality bases) assembled on 2008-07-30
> FMO04482.5prime
ATAGCATACATAATACGAAGTTATCAGTCGACATGGTCAAGGAGAAGCCC
AACTCGACTCGCATCTACGACAAGGATGGATTTAGGCGCCGGGCTGCTTG
TATTTGCGTGAAATCGGAGAATGAGGCGGAGGTACTCTTGGTAACCTCAT
CTCGTCGCCCGGAGTTGTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAA
GAGGAGTCATCGGTGACAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGT
GGTTGGCGATCTGGGTCGTTGTCTCGGTGTATTCGAGAACAATGACCACA
TGCATCGCACCGAGGTGTTCGTGATGAACGTGACTCAGGAACTGGACGAG
TGGGAGGATTCGCGGAGCATCGGTCGCAAGCGCCAGTGGTTCACCATCGA
TGATGCACTCTCGCAGCTGGCGCTGCATAAGCCGACGCAGCAACACTATC
TGATGCAGCTGCAGCACTCGAAGACGCTGGACAACACGAATCGCGTGGTG
AACGCCACGCATCCGCCCAAGTTGACCAATGCCGCCACCCCAGCCGCATC
TCCCACTACGGCAGCAAGCTTTCTAGACCAT
FMO04482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aps-RC | 2744 | CG6391-RC | 854..1386 | 31..563 | 2665 | 100 | Plus |
| Aps-RB | 2364 | CG6391-RB | 1145..1677 | 31..563 | 2665 | 100 | Plus |
| Aps-RA | 2565 | CG6391-RA | 677..1207 | 33..563 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10896134..10896411 | 563..286 | 1390 | 100 | Minus |
| 3L | 28110227 | 3L | 10896469..10896626 | 287..130 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 10896777..10896877 | 133..33 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:34 has no hits.
FMO04482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:31 Download gff for
FMO04482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1145..1682 | 31..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:43:39 Download gff for
FMO04482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1169..1706 | 31..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:37 Download gff for
FMO04482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aps-RB | 1145..1682 | 31..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:37 Download gff for
FMO04482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10896129..10896409 | 288..568 | 99 | <- | Minus |
| 3L | 10896469..10896624 | 132..287 | 100 | <- | Minus |
| 3L | 10896779..10896882 | 28..131 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:31 Download gff for
FMO04482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10889229..10889509 | 288..568 | 99 | <- | Minus |
| arm_3L | 10889569..10889724 | 132..287 | 100 | <- | Minus |
| arm_3L | 10889879..10889982 | 28..131 | 98 | | Minus |
