FMO04483.5prime Sequence
791 bp (791 high quality bases) assembled on 2008-07-30
> FMO04483.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATGCGAACCTT
CCGATTTCCAAGAAACGCAAGTTCGTTTCCGATGGCATCTTCAAGGCTGA
ATTGAACGAGTTCCTGACTCGCGAACTCGCCGAGGATGGCTACTCCGGCG
TGGAGGTCCGTGTGACCCCCTCTCGCACTGAGATCATCATCATGGCCACC
AAGACCCAGCAGGTGCTGGGCGAGAAGGGCCGTCGCATTCGGGAGCTGAC
CGCCATGGTGCAGAAGCGTTTCAACTTCGAGACCGGACGCATTGAGTTGT
ACGCCGAGAAGGTGGCCGCTCGTGGCCTGTGCGCCATTGCCCAGGCTGAG
TCGCTGAGGTACAAGCTCACCGGAGGACTGGCCGTCCGTCGTGCTTGCTA
TGGTGTGCTCCGCTACATCATGGAGTCGGGAGCCAAGGGCTGCGAGGTCG
TCGTGTCCGGCAAACTGCGTGGTCAGCGTGCCAAGTCGATGAAATTCGTC
GATGGCCTGATGATCCATTCGGGAGATCCGTGCAACGACTATGTCGAGAC
CGCCACCCGTCATGTGCTCCTCCGCCAGGGAGTGCTTGGTATCAAGGTCA
AGGTCATGTTGCCCTACGACCCCAAGAACAAGATCGGCCCCAAGAAGCCG
CTGCCCGACAATGTGTCCGTTGTGGAGCCCAAGGAGGAGAAGATCTACGA
GACGCCCGAGACCGAGTACAAGATCCCCCCGCCCAGCAAGCCACTGGACG
ATCTGTCCGAGGCGAAAGTTTTGGCAAGCTTTCTAGACCAT
FMO04483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-RB | 1133 | CG6779-RB | 44..781 | 36..773 | 3690 | 100 | Plus |
| RpS3-RA | 854 | CG6779-RA | 44..781 | 36..773 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23359152..23359855 | 70..773 | 3520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:58 has no hits.
FMO04483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:13 Download gff for
FMO04483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 30..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:51:15 Download gff for
FMO04483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 47..797 | 30..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:29 Download gff for
FMO04483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 30..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:29 Download gff for
FMO04483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23358849..23358890 | 30..71 | 95 | -> | Plus |
| 3R | 23359154..23359862 | 72..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:13 Download gff for
FMO04483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19184571..19184612 | 30..71 | 95 | -> | Plus |
| arm_3R | 19184876..19185584 | 72..780 | 99 | | Plus |
