Clone FMO04485 Report

Search the DGRC for FMO04485

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:44
Well:85
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8661-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04485.5prime Sequence

646 bp (646 high quality bases) assembled on 2008-07-30

> FMO04485.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTATACCATTC
TTATTTTGGCTTTGGGCCTGTTTTGCGTAAATGCATTGGTGGCTCCTGTT
CCCAGCGCCCTGGACTCTTCGTCAGAACTGGACGATGTGACCGATGGTAG
CTTGGAGGTGGAGGACTTTGGCGTGCTGAGTACGACCTACAAATCCCTAA
AGATCGCTCTGCGAAGCATCAAGGGACTCAATTGCATAATCAAGTGGGTG
GCGGGCATCAAGGACAGTGCGACCCAATTTAACACGGACGTGGTCGTGTG
CGGCGTCACCGCCAGCAAGGATGTGACCAAATTGATCAACGCCAACAATA
AGATCCTCAGCACTTGCAACGACCTCATCAATCTGAGGTCCAACACTTGC
CCCCAAACGGACGACGAGGAGACGAAGGTCTCTGGCAGCTGCTTTGTTAA
GACTCTGCGCAAGGTGTGGTCCCTAAAGAAGCAAGTGGACAATGCCATCA
AGCTGGCCAAGAAGATCCCGCAAACCGGTCCCAATGCCGTCGCCTGTGTC
TCCGATGCCGTCAACACCCTGACCACCTACTACACCGCCTTTCCCCAGAA
CATCATCAGCTGCTCCAAGCTGACTTCTGCAAGCTTTCTAGACCAT

FMO04485.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8661-RA 677 CG8661-RA 27..621 34..628 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17283818..17284369 628..77 2760 100 Minus
X 23542271 X 17284428..17284474 80..34 235 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:55:55 has no hits.

FMO04485.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:39 Download gff for FMO04485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8661-RA 27..621 34..628 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:59 Download gff for FMO04485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8661-RA 10..604 34..628 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:49 Download gff for FMO04485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8661-RA 27..621 34..628 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:49 Download gff for FMO04485.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17283818..17284369 77..628 100 <- Minus
X 17284432..17284474 34..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:39 Download gff for FMO04485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17177851..17178402 77..628 100 <- Minus
arm_X 17178465..17178507 34..76 100   Minus