FMO04489.5prime Sequence
707 bp (707 high quality bases) assembled on 2008-07-30
> FMO04489.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGGTTTTTTAAACCGG
ATGGGTGAACTGGAGGGCCACGGTATGATGTTAAGTCCAACCGGAAGATC
CTCGCGTTGGCGCTACGATAACTCGGCGCCAACAAACTACGATGACAATG
CATTATATTGCGGTGGATTTTGGAAACAAACCGAAAATGATGGCAAATGT
GGACTGTGCGGAGACGACTGGAGCTTGGAGCAGCCGCGACCCAATGAGTT
GGGTGGAAAATATGGCAGTGGAGTGATTGTAAAGAGCTTTGCCGGAGTAG
ATGAAGCGGAAATTAATGTTAAGATCACAGCCAATCATCTGGGCTACTTC
CGCTTCCACATCTGCGATTTGGACGAAAATGGCAGCGAGTCGGAGGATTG
CTTTAACCAATATCCTTTGAATTTCACCGACGGTAGCCAGAAGTACTACA
TTAACACCACCACTGGCGATATCCCAGTAACCGTGAAACTGCCCAGTGAT
CTCAACTGCATTCATTGCGTTTTGCGCTGGACTTACACGGCGGGAAATAA
TTGGGGTGTTTGTGAGGATGGGACGGGCGCCATGGGTTGTGGGGCGCAGG
AAACCTTTATTAACTGCGCTGATATCAGTGTACTATCCTCAGCGAGAAGT
ATTATCCAGGAGGTGCCCGTGGAGGTGGCGGAATCGAAGGCAAGCTTTCT
AGACCAT
FMO04489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4367-RB | 939 | CG4367-RB | 32..689 | 32..689 | 3290 | 100 | Plus |
| CG4367-RA | 816 | CG4367-RA | 32..689 | 32..689 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20304205..20304725 | 689..169 | 2590 | 99.8 | Minus |
| 3R | 32079331 | 3R | 20304782..20304923 | 173..32 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:32 has no hits.
FMO04489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:21 Download gff for
FMO04489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 26..689 | 24..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:46:02 Download gff for
FMO04489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 26..689 | 24..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:40 Download gff for
FMO04489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 26..689 | 24..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:40 Download gff for
FMO04489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20304205..20304720 | 174..689 | 100 | <- | Minus |
| 3R | 20304782..20304931 | 21..173 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:21 Download gff for
FMO04489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16129927..16130442 | 174..689 | 100 | <- | Minus |
| arm_3R | 16130504..16130653 | 21..173 | 96 | <- | Minus |
